MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.9 nTPM
HPA:41.9 nTPM
GTEx:37.8 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:103.8 nTPM
Mouse:7.9 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2586 Male, age 75, left hemisphere 30.0
2828 Female, age 72, unknown 24.8
2666 Male, age 74, left hemisphere 18.3
2411 Female, age 72, unknown 17.7
1870 Female, age 42, unknown 15.0
1830 Male, age 51, unknown 14.4
2219 Male, age 76, both hemispheres 13.3
1827 Male, age 72, unknown 13.1
2019 Male, age 18, unknown 11.9
1833 Male, age 53, unknown 8.5
Dorsal raphe nucleus
nTPM: 19.9
2016 Female, age 72, unknown 32.2
1828 Male, age 53, unknown 20.3
2047 Male, age 72, unknown 19.8
2750 Male, age 76, both hemispheres 14.0
2298 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 18.4
2849 Male, age 72, unknown 22.1
2097 Female, age 72, unknown 21.3
1890 Male, age 53, unknown 16.5
1848 Female, age 42, unknown 13.6
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Pedunculopontine tegmental nucleus
nTPM: 16.1
2338 Male, age 61, both hemispheres 19.9
1921 Female, age 85, both hemispheres 18.2
2334 Male, age 80, both hemispheres 10.1
Periaquaductal grey, anterior
nTPM: 25.9
2502 Female, age 75, unknown 39.5
1795 Male, age 51, unknown 23.3
1947 Male, age 18, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 18.4
1840 Male, age 53, unknown 20.3
1831 Male, age 72, unknown 19.3
2850 Male, age 76, both hemispheres 18.0
2464 Female, age 72, unknown 15.8
Periaquaductal grey, lateral
nTPM: 22.1
2053 Male, age 18, unknown 26.9
2272 Male, age 74, both hemispheres 23.5
2140 Male, age 76, both hemispheres 15.9
Pretectal area
nTPM: 19.4
2825 Male, age 18, unknown 44.1
2407 Male, age 75, both hemispheres 33.6
2667 Female, age 75, unknown 26.8
2273 Male, age 74, both hemispheres 24.7
2224 Female, age 72, unknown 17.7
2316 Male, age 76, right hemisphere 13.3
1944 Female, age 72, unknown 12.2
1815 Male, age 53, unknown 11.9
2007 Male, age 72, unknown 11.1
1817 Female, age 42, unknown 9.7
1816 Male, age 51, unknown 7.9
Red nucleus
nTPM: 41.9
1821 Female, age 72, unknown 66.3
2769 Male, age 72, unknown 58.4
2227 Male, age 72, unknown 54.0
1865 Male, age 51, unknown 51.4
1904 Male, age 53, unknown 49.3
2823 Male, age 76, right hemisphere 45.4
1954 Female, age 42, unknown 45.0
2503 Female, age 72, unknown 38.3
2588 Male, age 74, left hemisphere 32.1
2584 Male, age 75, left hemisphere 25.2
2725 Female, age 75, unknown 21.4
2785 Male, age 18, unknown 16.3
Substantia nigra
nTPM: 12.9
2699 Male, age 18, unknown 25.1
1851 Male, age 51, unknown 16.8
1889 Female, age 72, unknown 16.5
2665 Male, age 74, both hemispheres 15.1
2583 Male, age 75, right hemisphere 13.0
1941 Male, age 53, unknown 10.5
2241 Male, age 72, unknown 10.5
2409 Female, age 72, unknown 7.9
1916 Female, age 42, unknown 7.0
2590 Female, age 75, unknown 6.8
Superior colliculus
nTPM: 19.8
2664 Male, age 75, both hemispheres 59.9
2587 Male, age 74, left hemisphere 20.4
2668 Female, age 75, unknown 20.3
1796 Male, age 53, unknown 17.7
1839 Male, age 51, unknown 17.0
1913 Female, age 42, unknown 14.2
1895 Male, age 76, right hemisphere 13.4
2261 Male, age 18, unknown 12.9
1995 Male, age 72, unknown 11.9
2087 Female, age 72, unknown 10.2
Ventral tegmental area
nTPM: 27.6
2021 Male, age 53, unknown 50.0
1942 Male, age 51, unknown 32.7
1915 Female, age 42, unknown 28.3
2410 Female, age 72, unknown 19.7
2223 Female, age 72, unknown 19.5
2218 Male, age 76, both hemispheres 15.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.8
Samples: 139

Max nTPM: 215.4
Min nTPM: 7.3
Std nTPM: 25.8
Median nTPM: 33.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 215.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 161.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 122.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 86.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 85.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 77.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 75.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 71.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 70.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 66.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 65.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.3
FF:10158-103A5 76 years, female 16.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 103.8
Pig sample Sample description nTPM
Midbrain
nTPM: 78.2
Samples: 4

Max nTPM: 119.9
Min nTPM: 58.9
Sample A Female 119.9
Sample B Female 65.3
Sample C Male 58.9
Sample D Male 68.6
Periaqueductal gray
nTPM: 39.4
Samples: 3

Max nTPM: 42.7
Min nTPM: 34.1
Sample B Female 41.4
Sample C Male 42.7
Sample D Male 34.1
Substantia nigra
nTPM: 103.8
Samples: 4

Max nTPM: 120.4
Min nTPM: 84.7
Sample A Female 84.7
Sample B Female 120.4
Sample C Male 100.5
Sample D Male 109.7
Superior colliculi
nTPM: 77.9
Samples: 4

Max nTPM: 105.4
Min nTPM: 49.5
Sample A Female 78.0
Sample B Female 49.5
Sample C Male 78.7
Sample D Male 105.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 9.6
Min nTPM: 5.9
Sample A Male 9.6
Sample B Male 6.6
Sample C Female 5.9
Sample D Female 9.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.