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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:3076.6 nTPM
FANTOM5:2470.9 Scaled Tags Per Million
Pig:686.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA056030Antibody HPA063513Antibody CAB000039
Glial cells MediumLowMedium
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3076.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3076.6
Samples: 246

Max nTPM: 12445.1
Min nTPM: 104.1
Std nTPM: 2116.8
Median nTPM: 2462.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12445.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 10839.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 10227.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 9946.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 9076.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 8783.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8757.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8102.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 7884.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 7675.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 7481.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 7470.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 7387.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 7211.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 7134.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 7120.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 6998.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 6926.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6917.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 6820.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 6747.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 6708.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 6701.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 6323.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 6069.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 5930.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 5613.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 5579.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 5514.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 5490.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 5434.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 5361.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 5292.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 5269.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 5268.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 5256.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 5235.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5185.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 5175.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 5137.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 5119.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 5115.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 4975.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 4958.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 4868.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 4837.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4835.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4788.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 4751.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 4655.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4577.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 4544.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4508.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 4396.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 4383.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4291.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 4253.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 4214.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4126.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 4120.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 4112.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 3967.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 3914.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 3883.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 3841.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3803.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 3724.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3655.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 3602.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3572.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3571.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 3555.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 3523.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 3489.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3426.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 3424.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 3403.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 3346.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3345.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 3334.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3333.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 3265.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3222.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3140.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3130.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3088.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 3057.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 3053.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 3043.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 3040.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 3014.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 3012.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2998.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2944.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 2926.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2909.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2885.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2864.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2845.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2843.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2837.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2814.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 2772.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2770.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2756.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2754.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 2754.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2716.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2710.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2692.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2669.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2663.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2647.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2640.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2629.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2609.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2579.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2576.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2519.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2508.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2506.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 2503.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2467.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2456.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2451.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2445.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2440.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2421.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2406.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2369.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2316.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2314.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2280.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2273.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2270.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 2264.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2256.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2244.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2244.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2244.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2235.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2231.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2180.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2179.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2170.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2162.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2075.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2066.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2053.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2033.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1979.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1960.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1943.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1941.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1931.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1912.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1904.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1873.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1869.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1867.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1865.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1845.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1843.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1823.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1803.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1802.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1801.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1794.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1757.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1731.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1728.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1724.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1723.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1701.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1689.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1684.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1666.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1664.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1661.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1661.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1656.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1645.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1636.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1634.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1628.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1626.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1593.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1582.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1576.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1556.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1554.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1533.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1525.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1498.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1495.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1455.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1453.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1436.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1426.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1422.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1420.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1417.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1407.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1400.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1398.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1397.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1390.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1325.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1309.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1306.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1272.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1246.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1246.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1200.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1196.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1147.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1145.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1133.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1101.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1091.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1062.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1051.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1041.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1040.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 983.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 957.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 945.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 944.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 917.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 911.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 905.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 875.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 828.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 817.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 802.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 789.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 788.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 713.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 676.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 666.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 595.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 528.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 443.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 385.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 300.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 104.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2470.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2470.9
FF:10164-103B2 76 years, female 2470.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 686.2
Pig sample Sample description nTPM
Caudate
nTPM: 686.2
Samples: 4

Max nTPM: 805.4
Min nTPM: 591.9
Sample A Female 682.4
Sample B Female 665.2
Sample C Male 805.4
Sample D Male 591.9

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