MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:891.1 nTPM
HPA:891.1 nTPM
GTEx:1054.1 nTPM
FANTOM5:291.0 Scaled Tags Per Million
Pig:864.4 nTPM
Mouse:1311.5 nTPM
Allen mouse:12.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 891.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 854.5
2411 Female, age 72, unknown 872.1
2666 Male, age 74, left hemisphere 865.0
1827 Male, age 72, unknown 864.9
2019 Male, age 18, unknown 862.3
1870 Female, age 42, unknown 860.8
2219 Male, age 76, both hemispheres 858.2
2828 Female, age 72, unknown 853.1
1833 Male, age 53, unknown 844.1
1830 Male, age 51, unknown 834.3
2586 Male, age 75, left hemisphere 830.5
Dorsal raphe nucleus
nTPM: 846.9
1828 Male, age 53, unknown 866.4
2298 Female, age 72, unknown 854.0
2750 Male, age 76, both hemispheres 846.3
2047 Male, age 72, unknown 843.2
2016 Female, age 72, unknown 824.5
Inferior colliculus
nTPM: 862.6
1890 Male, age 53, unknown 877.7
1848 Female, age 42, unknown 864.7
2097 Female, age 72, unknown 859.4
2849 Male, age 72, unknown 848.5
Median raphe nucleus
nTPM: 853.0
2220 Male, age 76, midline 853.0
Pedunculopontine tegmental nucleus
nTPM: 865.8
2334 Male, age 80, both hemispheres 872.0
2338 Male, age 61, both hemispheres 862.9
1921 Female, age 85, both hemispheres 862.6
Periaquaductal grey, anterior
nTPM: 850.9
1947 Male, age 18, unknown 860.3
2502 Female, age 75, unknown 847.0
1795 Male, age 51, unknown 845.4
Periaquaductal grey, dorsal
nTPM: 827.2
1840 Male, age 53, unknown 836.8
1831 Male, age 72, unknown 830.0
2464 Female, age 72, unknown 823.0
2850 Male, age 76, both hemispheres 819.2
Periaquaductal grey, lateral
nTPM: 824.1
2272 Male, age 74, both hemispheres 828.0
2053 Male, age 18, unknown 826.4
2140 Male, age 76, both hemispheres 817.8
Pretectal area
nTPM: 864.4
1817 Female, age 42, unknown 910.5
1944 Female, age 72, unknown 904.4
2007 Male, age 72, unknown 899.0
1816 Male, age 51, unknown 894.0
2667 Female, age 75, unknown 870.0
1815 Male, age 53, unknown 867.5
2825 Male, age 18, unknown 841.4
2224 Female, age 72, unknown 833.7
2273 Male, age 74, both hemispheres 831.1
2316 Male, age 76, right hemisphere 829.2
2407 Male, age 75, both hemispheres 827.1
Red nucleus
nTPM: 879.6
2503 Female, age 72, unknown 909.1
1821 Female, age 72, unknown 898.4
2785 Male, age 18, unknown 891.7
2588 Male, age 74, left hemisphere 888.8
2725 Female, age 75, unknown 882.9
2227 Male, age 72, unknown 881.6
1865 Male, age 51, unknown 880.6
2769 Male, age 72, unknown 877.8
1954 Female, age 42, unknown 876.7
1904 Male, age 53, unknown 865.8
2823 Male, age 76, right hemisphere 857.8
2584 Male, age 75, left hemisphere 843.7
Substantia nigra
nTPM: 891.1
1916 Female, age 42, unknown 942.4
1889 Female, age 72, unknown 910.3
2665 Male, age 74, both hemispheres 909.7
1851 Male, age 51, unknown 904.5
1941 Male, age 53, unknown 895.0
2409 Female, age 72, unknown 890.9
2241 Male, age 72, unknown 890.3
2699 Male, age 18, unknown 880.9
2590 Female, age 75, unknown 843.8
2583 Male, age 75, right hemisphere 843.3
Superior colliculus
nTPM: 852.6
2668 Female, age 75, unknown 887.8
2087 Female, age 72, unknown 887.3
1895 Male, age 76, right hemisphere 876.0
1796 Male, age 53, unknown 862.2
2587 Male, age 74, left hemisphere 861.3
2261 Male, age 18, unknown 845.9
1839 Male, age 51, unknown 838.9
1913 Female, age 42, unknown 834.7
1995 Male, age 72, unknown 821.9
2664 Male, age 75, both hemispheres 810.1
Ventral tegmental area
nTPM: 865.5
1915 Female, age 42, unknown 892.6
2410 Female, age 72, unknown 883.7
2218 Male, age 76, both hemispheres 875.1
1942 Male, age 51, unknown 860.1
2223 Female, age 72, unknown 859.9
2021 Male, age 53, unknown 821.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1054.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1054.1
Samples: 139

Max nTPM: 2681.4
Min nTPM: 568.4
Std nTPM: 319.1
Median nTPM: 996.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2681.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2411.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1957.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1875.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1750.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1640.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1636.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1634.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1604.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1589.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1565.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 291.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 291.0
FF:10158-103A5 76 years, female 291.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 864.4
Pig sample Sample description nTPM
Midbrain
nTPM: 751.6
Samples: 4

Max nTPM: 987.3
Min nTPM: 630.3
Sample A Female 734.0
Sample B Female 654.6
Sample C Male 987.3
Sample D Male 630.3
Periaqueductal gray
nTPM: 505.6
Samples: 3

Max nTPM: 552.9
Min nTPM: 428.4
Sample B Female 535.4
Sample C Male 552.9
Sample D Male 428.4
Substantia nigra
nTPM: 645.6
Samples: 4

Max nTPM: 870.4
Min nTPM: 492.5
Sample A Female 870.4
Sample B Female 492.5
Sample C Male 664.4
Sample D Male 554.9
Superior colliculi
nTPM: 864.4
Samples: 4

Max nTPM: 1076.8
Min nTPM: 669.7
Sample A Female 951.1
Sample B Female 669.7
Sample C Male 1076.8
Sample D Male 759.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1311.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1311.5
Samples: 4

Max nTPM: 1486.8
Min nTPM: 1158.4
Sample A Male 1486.8
Sample B Male 1226.7
Sample C Female 1158.4
Sample D Female 1374.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.4
69568980 Antisense, RP_050426_03_C01, Mouse strain C57BL/6J (56 days, male) 12.8
73992933 Antisense, RP_051214_03_C11, Mouse strain C57BL/6J (56 days, male) 12.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.