We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NDFIP1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • NDFIP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:87.4 nTPM
HPA:87.4 nTPM
GTEx:83.7 nTPM
FANTOM5:382.4 Scaled Tags Per Million
Pig:223.2 nTPM
Mouse:574.0 nTPM
Allen mouse:24.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 87.4
Sample id Sample description nTPM
Amygdala
nTPM: 69.0
2814 Male, age 76, right hemisphere 79.5
1987 Female, age 91, left hemisphere 75.8
2514 Male, age 75, right hemisphere 71.1
2517 Female, age 94, left hemisphere 61.1
2695 Female, age 67, right hemisphere 57.5
Basal amygdala
nTPM: 62.6
2110 Male, age 80, left hemisphere 69.8
1955 Male, age 76, both hemispheres 69.0
2243 Female, age 91, right hemisphere 68.8
2609 Male, age 75, right hemisphere 65.0
2685 Female, age 94, left hemisphere 62.0
2827 Female, age 67, right hemisphere 41.0
Central amygdala
nTPM: 67.9
1905 Male, age 76, both hemispheres 76.7
2239 Male, age 80, left hemisphere 71.6
2515 Male, age 75, right hemisphere 68.9
2701 Female, age 91, right hemisphere 62.2
2826 Female, age 94, left hemisphere 60.0
Corticomedial amygdala
nTPM: 68.3
2829 Male, age 80, left hemisphere 83.0
2242 Female, age 91, right hemisphere 74.9
2429 Female, age 94, left hemisphere 70.5
2240 Male, age 76, both hemispheres 69.3
2428 Male, age 75, right hemisphere 67.3
2535 Female, age 67, right hemisphere 44.6
Lateral amygdala
nTPM: 59.8
1883 Male, age 76, both hemispheres 80.0
2534 Female, age 94, left hemisphere 67.1
2516 Male, age 75, right hemisphere 63.5
2255 Female, age 91, right hemisphere 54.5
2256 Male, age 80, left hemisphere 52.0
2830 Female, age 67, right hemisphere 42.0
Stria terminalis, bed nucleus
nTPM: 87.4
1974 Female, age 91, both hemispheres 104.5
2486 Female, age 94, both hemispheres 89.5
2201 Male, age 74, unknown 68.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 83.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 83.7
Samples: 152

Max nTPM: 156.2
Min nTPM: 26.7
Std nTPM: 25.9
Median nTPM: 81.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 156.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 145.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 142.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 142.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 140.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 132.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 132.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 131.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 125.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 124.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 124.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 122.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 120.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 119.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 114.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 113.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 113.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 112.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 112.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 111.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 110.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 110.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 110.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 109.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 108.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 108.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 107.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 106.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 106.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 105.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 105.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 103.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 103.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 102.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 102.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 102.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 102.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 100.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 100.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 99.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 99.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 98.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 98.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 96.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 96.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 95.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 94.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 94.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 93.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 93.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 91.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 90.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 89.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 89.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 89.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 87.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 86.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 85.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 85.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 85.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 84.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 84.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 83.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 83.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 82.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 81.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 81.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 80.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 80.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 80.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 80.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 79.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 79.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 79.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 78.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 78.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 77.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 77.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 76.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 76.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 74.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 74.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 74.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 72.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 72.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 72.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 72.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 71.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 70.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 70.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 70.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 69.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 69.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 69.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 69.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 68.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 66.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 65.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 64.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 63.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 63.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 62.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 62.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 60.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 59.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 58.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 57.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 57.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 55.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 55.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 54.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 53.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 53.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 53.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 53.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 52.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 52.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 51.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 50.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 50.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 50.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 49.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 47.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 41.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 40.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 39.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 39.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 33.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 26.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 382.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 382.4
FF:10151-102I7 76 years, female 382.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 223.2
Pig sample Sample description nTPM
Amygdala
nTPM: 223.2
Samples: 4

Max nTPM: 319.8
Min nTPM: 176.6
Sample A Female 319.8
Sample B Female 184.7
Sample C Male 176.6
Sample D Male 211.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 574.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 574.1
Samples: 4

Max nTPM: 597.7
Min nTPM: 549.9
Sample A Male 593.8
Sample B Male 597.7
Sample C Female 554.8
Sample D Female 549.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.8
72715 Antisense, RP_040407_01_H06, Mouse strain C57BL/6J (56 days, male) 24.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.