MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.6 nTPM
HPA:73.6 nTPM
GTEx:69.7 nTPM
FANTOM5:190.4 Scaled Tags Per Million
Pig:343.4 nTPM
Mouse:726.3 nTPM
Allen mouse:24.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.4
1827 Male, age 72, unknown 70.1
2411 Female, age 72, unknown 67.1
1870 Female, age 42, unknown 65.6
2019 Male, age 18, unknown 61.3
2666 Male, age 74, left hemisphere 58.9
2586 Male, age 75, left hemisphere 58.7
2828 Female, age 72, unknown 58.6
2219 Male, age 76, both hemispheres 56.3
1833 Male, age 53, unknown 55.3
1830 Male, age 51, unknown 51.9
Dorsal raphe nucleus
nTPM: 64.5
2298 Female, age 72, unknown 81.7
2047 Male, age 72, unknown 63.3
2750 Male, age 76, both hemispheres 62.1
1828 Male, age 53, unknown 61.0
2016 Female, age 72, unknown 54.6
Inferior colliculus
nTPM: 64.9
2097 Female, age 72, unknown 80.9
1848 Female, age 42, unknown 63.7
1890 Male, age 53, unknown 59.4
2849 Male, age 72, unknown 55.7
Median raphe nucleus
nTPM: 68.0
2220 Male, age 76, midline 68.0
Pedunculopontine tegmental nucleus
nTPM: 62.1
1921 Female, age 85, both hemispheres 70.3
2334 Male, age 80, both hemispheres 61.9
2338 Male, age 61, both hemispheres 54.1
Periaquaductal grey, anterior
nTPM: 69.9
1795 Male, age 51, unknown 72.8
1947 Male, age 18, unknown 70.6
2502 Female, age 75, unknown 66.4
Periaquaductal grey, dorsal
nTPM: 62.0
1840 Male, age 53, unknown 67.0
1831 Male, age 72, unknown 63.0
2464 Female, age 72, unknown 59.3
2850 Male, age 76, both hemispheres 58.8
Periaquaductal grey, lateral
nTPM: 60.3
2053 Male, age 18, unknown 64.7
2272 Male, age 74, both hemispheres 60.6
2140 Male, age 76, both hemispheres 55.6
Pretectal area
nTPM: 73.6
1816 Male, age 51, unknown 97.1
1944 Female, age 72, unknown 93.3
2007 Male, age 72, unknown 82.3
1817 Female, age 42, unknown 78.5
1815 Male, age 53, unknown 75.7
2224 Female, age 72, unknown 73.4
2667 Female, age 75, unknown 69.3
2273 Male, age 74, both hemispheres 66.6
2825 Male, age 18, unknown 61.2
2316 Male, age 76, right hemisphere 58.2
2407 Male, age 75, both hemispheres 54.5
Red nucleus
nTPM: 55.0
2725 Female, age 75, unknown 65.1
1821 Female, age 72, unknown 63.6
2785 Male, age 18, unknown 59.0
2503 Female, age 72, unknown 55.1
1954 Female, age 42, unknown 55.0
2823 Male, age 76, right hemisphere 54.1
2584 Male, age 75, left hemisphere 53.3
1904 Male, age 53, unknown 52.2
2769 Male, age 72, unknown 51.9
2227 Male, age 72, unknown 51.8
1865 Male, age 51, unknown 49.8
2588 Male, age 74, left hemisphere 48.6
Substantia nigra
nTPM: 65.7
1889 Female, age 72, unknown 77.3
2241 Male, age 72, unknown 74.1
1941 Male, age 53, unknown 72.9
1916 Female, age 42, unknown 72.7
1851 Male, age 51, unknown 66.2
2409 Female, age 72, unknown 62.6
2583 Male, age 75, right hemisphere 60.2
2590 Female, age 75, unknown 59.6
2665 Male, age 74, both hemispheres 59.6
2699 Male, age 18, unknown 52.4
Superior colliculus
nTPM: 65.1
2087 Female, age 72, unknown 80.7
2261 Male, age 18, unknown 79.4
1796 Male, age 53, unknown 70.3
2668 Female, age 75, unknown 64.0
1895 Male, age 76, right hemisphere 63.9
2587 Male, age 74, left hemisphere 61.9
1839 Male, age 51, unknown 59.4
1913 Female, age 42, unknown 59.3
2664 Male, age 75, both hemispheres 56.4
1995 Male, age 72, unknown 55.4
Ventral tegmental area
nTPM: 63.9
2410 Female, age 72, unknown 68.7
1915 Female, age 42, unknown 67.4
2218 Male, age 76, both hemispheres 65.1
1942 Male, age 51, unknown 64.5
2021 Male, age 53, unknown 59.7
2223 Female, age 72, unknown 57.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.7
Samples: 139

Max nTPM: 184.2
Min nTPM: 32.4
Std nTPM: 25.8
Median nTPM: 64.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 184.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 166.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 151.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 144.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 136.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 123.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 120.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 118.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 110.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 109.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 104.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 190.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 190.4
FF:10158-103A5 76 years, female 190.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 343.4
Pig sample Sample description nTPM
Midbrain
nTPM: 343.4
Samples: 4

Max nTPM: 470.5
Min nTPM: 235.0
Sample A Female 289.6
Sample B Female 235.0
Sample C Male 470.5
Sample D Male 378.3
Periaqueductal gray
nTPM: 266.2
Samples: 3

Max nTPM: 329.5
Min nTPM: 232.8
Sample B Female 232.8
Sample C Male 329.5
Sample D Male 236.2
Substantia nigra
nTPM: 293.9
Samples: 4

Max nTPM: 413.3
Min nTPM: 132.2
Sample A Female 413.3
Sample B Female 237.2
Sample C Male 392.8
Sample D Male 132.2
Superior colliculi
nTPM: 313.3
Samples: 4

Max nTPM: 402.1
Min nTPM: 208.3
Sample A Female 350.1
Sample B Female 208.3
Sample C Male 402.1
Sample D Male 292.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 726.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 726.3
Samples: 4

Max nTPM: 740.6
Min nTPM: 708.0
Sample A Male 723.2
Sample B Male 733.4
Sample C Female 740.6
Sample D Female 708.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.7
72715 Antisense, RP_040407_01_H06, Mouse strain C57BL/6J (56 days, male) 24.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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