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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:170.9 nTPM
HPA:170.9 nTPM
GTEx:187.0 nTPM
FANTOM5:78.1 Scaled Tags Per Million
Pig:66.9 nTPM
Mouse:60.2 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 170.9
Sample id Sample description nTPM
Amygdala
nTPM: 168.7
1987 Female, age 91, left hemisphere 175.2
2695 Female, age 67, right hemisphere 174.9
2514 Male, age 75, right hemisphere 167.7
2517 Female, age 94, left hemisphere 164.1
2814 Male, age 76, right hemisphere 161.5
Basal amygdala
nTPM: 165.5
2609 Male, age 75, right hemisphere 188.4
2243 Female, age 91, right hemisphere 177.6
2110 Male, age 80, left hemisphere 163.9
1955 Male, age 76, both hemispheres 161.9
2685 Female, age 94, left hemisphere 158.0
2827 Female, age 67, right hemisphere 143.5
Central amygdala
nTPM: 169.1
2515 Male, age 75, right hemisphere 185.8
2826 Female, age 94, left hemisphere 175.8
1905 Male, age 76, both hemispheres 165.1
2239 Male, age 80, left hemisphere 162.7
2701 Female, age 91, right hemisphere 155.9
Corticomedial amygdala
nTPM: 170.9
2242 Female, age 91, right hemisphere 198.7
2829 Male, age 80, left hemisphere 185.5
2428 Male, age 75, right hemisphere 176.9
2240 Male, age 76, both hemispheres 156.9
2429 Female, age 94, left hemisphere 154.2
2535 Female, age 67, right hemisphere 153.5
Lateral amygdala
nTPM: 160.5
2516 Male, age 75, right hemisphere 171.1
2256 Male, age 80, left hemisphere 167.0
2255 Female, age 91, right hemisphere 165.8
2534 Female, age 94, left hemisphere 163.8
1883 Male, age 76, both hemispheres 156.1
2830 Female, age 67, right hemisphere 139.4
Stria terminalis, bed nucleus
nTPM: 146.7
2201 Male, age 74, unknown 153.9
1974 Female, age 91, both hemispheres 146.2
2486 Female, age 94, both hemispheres 139.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 187.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 187.0
Samples: 152

Max nTPM: 431.3
Min nTPM: 15.2
Std nTPM: 72.1
Median nTPM: 176.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 431.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 376.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 371.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 366.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 363.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 351.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 339.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 336.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 331.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 320.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 317.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 299.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 294.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 294.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 292.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 281.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 278.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 269.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 269.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 264.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 261.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 260.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 257.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 253.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 253.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 250.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 249.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 247.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 245.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 244.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 243.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 241.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 240.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 240.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 237.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 230.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 229.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 225.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 223.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 222.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 222.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 220.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 219.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 218.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 217.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 216.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 212.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 210.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 206.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 204.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 202.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 202.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 202.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 201.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 199.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 198.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 198.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 198.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 196.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 195.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 194.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 194.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 187.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 187.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 185.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 185.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 184.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 184.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 182.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 182.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 180.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 179.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 178.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 178.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 176.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 175.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 174.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 173.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 172.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 172.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 172.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 172.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 167.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 166.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 165.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 163.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 163.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 162.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 161.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 160.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 160.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 159.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 159.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 158.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 156.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 154.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 153.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 152.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 150.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 148.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 143.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 142.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 142.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 142.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 141.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 139.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 138.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 138.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 135.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 133.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 133.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 130.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 130.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 130.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 129.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 124.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 122.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 122.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 120.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 120.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 118.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 118.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 105.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 102.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 102.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 101.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 101.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 100.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 94.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 94.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 93.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 90.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 89.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 89.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 89.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 88.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 87.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 75.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 72.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 70.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 78.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 78.1
FF:10151-102I7 76 years, female 78.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.9
Pig sample Sample description nTPM
Amygdala
nTPM: 67.0
Samples: 4

Max nTPM: 83.8
Min nTPM: 44.7
Sample A Female 83.8
Sample B Female 74.4
Sample C Male 64.9
Sample D Male 44.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 60.2
Samples: 4

Max nTPM: 69.2
Min nTPM: 53.7
Sample A Male 53.7
Sample B Male 56.8
Sample C Female 69.2
Sample D Female 61.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
1912 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.6
1913 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
68498944 Antisense, RP_050113_02_F08, Mouse strain C57BL/6J (56 days, male) 0.0

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