MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:213.3 nTPM
HPA:213.3 nTPM
GTEx:212.2 nTPM
FANTOM5:141.7 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 213.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 186.6
2411 Female, age 72, unknown 217.9
1827 Male, age 72, unknown 202.8
2019 Male, age 18, unknown 191.0
1870 Female, age 42, unknown 190.3
2828 Female, age 72, unknown 183.7
1833 Male, age 53, unknown 181.1
1830 Male, age 51, unknown 180.2
2219 Male, age 76, both hemispheres 179.7
2666 Male, age 74, left hemisphere 176.9
2586 Male, age 75, left hemisphere 162.2
Dorsal raphe nucleus
nTPM: 209.5
2298 Female, age 72, unknown 243.9
2047 Male, age 72, unknown 214.6
1828 Male, age 53, unknown 198.1
2750 Male, age 76, both hemispheres 197.8
2016 Female, age 72, unknown 193.3
Inferior colliculus
nTPM: 195.4
2097 Female, age 72, unknown 211.2
1848 Female, age 42, unknown 194.3
1890 Male, age 53, unknown 190.4
2849 Male, age 72, unknown 185.7
Median raphe nucleus
nTPM: 213.3
2220 Male, age 76, midline 213.3
Pedunculopontine tegmental nucleus
nTPM: 205.4
2334 Male, age 80, both hemispheres 213.7
1921 Female, age 85, both hemispheres 208.9
2338 Male, age 61, both hemispheres 193.5
Periaquaductal grey, anterior
nTPM: 197.2
2502 Female, age 75, unknown 201.6
1947 Male, age 18, unknown 195.8
1795 Male, age 51, unknown 194.3
Periaquaductal grey, dorsal
nTPM: 197.6
1840 Male, age 53, unknown 212.8
2850 Male, age 76, both hemispheres 196.8
1831 Male, age 72, unknown 192.2
2464 Female, age 72, unknown 188.7
Periaquaductal grey, lateral
nTPM: 201.8
2272 Male, age 74, both hemispheres 213.6
2140 Male, age 76, both hemispheres 197.7
2053 Male, age 18, unknown 193.9
Pretectal area
nTPM: 200.0
2224 Female, age 72, unknown 216.0
2273 Male, age 74, both hemispheres 214.6
2007 Male, age 72, unknown 209.5
1816 Male, age 51, unknown 204.1
1817 Female, age 42, unknown 202.2
1944 Female, age 72, unknown 201.0
2667 Female, age 75, unknown 196.8
2825 Male, age 18, unknown 194.0
1815 Male, age 53, unknown 190.5
2316 Male, age 76, right hemisphere 187.7
2407 Male, age 75, both hemispheres 183.5
Red nucleus
nTPM: 183.8
1821 Female, age 72, unknown 207.1
1954 Female, age 42, unknown 192.3
2725 Female, age 75, unknown 191.7
2785 Male, age 18, unknown 188.2
2769 Male, age 72, unknown 183.7
2503 Female, age 72, unknown 183.6
1865 Male, age 51, unknown 183.2
1904 Male, age 53, unknown 180.8
2227 Male, age 72, unknown 180.6
2588 Male, age 74, left hemisphere 174.9
2823 Male, age 76, right hemisphere 173.7
2584 Male, age 75, left hemisphere 165.6
Substantia nigra
nTPM: 204.6
1916 Female, age 42, unknown 235.9
1851 Male, age 51, unknown 218.3
1889 Female, age 72, unknown 214.9
1941 Male, age 53, unknown 210.5
2699 Male, age 18, unknown 201.8
2241 Male, age 72, unknown 199.1
2665 Male, age 74, both hemispheres 198.5
2590 Female, age 75, unknown 194.9
2409 Female, age 72, unknown 193.9
2583 Male, age 75, right hemisphere 178.2
Superior colliculus
nTPM: 188.8
1796 Male, age 53, unknown 205.1
2587 Male, age 74, left hemisphere 205.1
2087 Female, age 72, unknown 200.4
1895 Male, age 76, right hemisphere 192.4
2261 Male, age 18, unknown 190.8
1839 Male, age 51, unknown 189.1
2668 Female, age 75, unknown 185.0
1913 Female, age 42, unknown 179.8
1995 Male, age 72, unknown 178.0
2664 Male, age 75, both hemispheres 162.7
Ventral tegmental area
nTPM: 208.4
2410 Female, age 72, unknown 233.3
1915 Female, age 42, unknown 214.9
2218 Male, age 76, both hemispheres 211.2
2021 Male, age 53, unknown 199.4
1942 Male, age 51, unknown 196.9
2223 Female, age 72, unknown 194.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 212.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 212.2
Samples: 139

Max nTPM: 382.2
Min nTPM: 122.8
Std nTPM: 53.3
Median nTPM: 199.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 382.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 359.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 336.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 334.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 329.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 329.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 328.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 306.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 303.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 298.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 298.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.7
FF:10158-103A5 76 years, female 141.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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