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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:228.5 nTPM
HPA:228.5 nTPM
GTEx:185.7 nTPM
FANTOM5:169.4 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 228.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 203.3
1981 Female, age 72, midline 233.3
2565 Male, age 75, midline 215.5
2048 Male, age 55, midline 198.3
2194 Female, age 79, both hemispheres 191.2
2816 Male, age 47, midline 178.3
Cervical spinal cord, dorsal horn
nTPM: 228.5
2069 Male, age 47, both hemispheres 257.6
2296 Male, age 66, both hemispheres 254.3
2173 Female, age 72, unknown 242.2
2297 Male, age 75, both hemispheres 208.1
2721 Male, age 90, both hemispheres 205.4
1877 Male, age 55, unknown 203.4
Cervical spinal cord, ventral horn
nTPM: 208.8
2098 Female, age 72, unknown 236.5
2480 Male, age 75, both hemispheres 227.9
2809 Male, age 90, both hemispheres 220.7
2068 Male, age 55, unknown 197.4
2295 Male, age 66, both hemispheres 192.3
2820 Female, age 79, both hemispheres 178.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 185.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 185.7
Samples: 159

Max nTPM: 284.7
Min nTPM: 122.3
Std nTPM: 34.3
Median nTPM: 182.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 284.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 282.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 280.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 276.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 272.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 271.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 265.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 260.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 250.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 250.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 249.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 241.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 232.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 232.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 229.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 226.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 225.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 224.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 223.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 222.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 219.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 218.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 218.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 216.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 216.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 216.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 216.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 215.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 214.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 214.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 212.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 211.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 211.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 211.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 211.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 210.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 210.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 210.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 210.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 209.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 207.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 206.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 205.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 204.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 204.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 202.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 202.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 198.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 198.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 198.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 196.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 196.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 196.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 196.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 194.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 192.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 192.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 191.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 191.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 191.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 190.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 189.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 189.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 188.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 188.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 188.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 187.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 186.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 185.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 185.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 184.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 184.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 184.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 184.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 184.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 183.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 182.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 182.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 181.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 180.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 180.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 179.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 179.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 177.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 176.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 176.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 176.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 176.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 175.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 175.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 174.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 174.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 174.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 173.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 173.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 173.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 172.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 171.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 171.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 171.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 170.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 170.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 168.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 167.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 166.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 166.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 166.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 166.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 165.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 165.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 165.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 164.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 163.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 162.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 162.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 160.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 159.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 159.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 158.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 156.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 155.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 155.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 155.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 155.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 155.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 155.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 155.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 154.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 153.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 152.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 152.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 152.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 151.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 151.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 150.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 150.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 149.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 149.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 148.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 148.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 145.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 145.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 144.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 143.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 143.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 139.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 136.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 135.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 134.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 132.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 131.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 131.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 129.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 127.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 124.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 122.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 169.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 169.4
FF:10181-103D1 60 years, female 190.9
FF:10159-103A6 76 years, female 148.0

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