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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:220.0 nTPM
HPA:185.7 nTPM
GTEx:220.0 nTPM
FANTOM5:136.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 185.7
overview
Male, age 65
Small intestine sample 232
nTPM: 172
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 173.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 181.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 215.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 220.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 220.0
Samples: 187

Max nTPM: 499.5
Min nTPM: 112.6
Std nTPM: 67.2
Median nTPM: 201.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 499.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 483.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 432.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 422.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 402.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 401.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 399.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 396.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 365.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 344.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 344.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 333.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 331.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 321.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 315.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 315.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 311.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 310.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 307.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 305.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 304.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 302.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 296.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 292.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 292.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 286.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 285.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 282.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 282.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 280.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 278.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 278.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 270.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 269.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 267.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 266.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 263.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 260.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 258.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 257.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 256.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 249.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 249.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 247.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 246.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 246.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 245.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 244.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 244.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 243.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 242.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 241.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 239.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 239.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 237.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 237.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 237.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 236.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 235.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 234.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 233.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 233.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 232.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 231.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 231.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 229.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 229.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 229.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 224.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 223.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 222.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 222.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 221.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 221.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 221.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 218.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 217.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 215.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 213.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 213.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 213.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 212.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 212.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 210.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 210.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 210.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 208.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 208.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 206.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 204.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 204.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 202.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 201.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 201.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 200.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 199.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 199.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 198.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 198.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 198.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 197.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 197.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 197.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 197.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 197.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 195.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 195.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 195.1
GTEX-1192X-2526-SM-59868 50-59 years, male 194.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 194.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 194.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 192.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 192.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 192.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 191.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 190.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 190.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 188.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 188.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 188.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 187.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 187.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 186.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 186.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 183.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 183.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 182.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 182.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 182.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 182.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 180.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 178.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 178.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 178.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 177.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 177.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 177.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 176.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 175.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 175.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 175.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 175.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 174.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 173.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 173.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 172.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 171.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 170.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 170.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 169.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 169.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 169.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 168.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 168.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 167.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 167.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 166.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 165.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 164.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 163.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 162.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 160.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 157.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 156.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 156.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 154.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 154.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 152.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 152.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 150.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 150.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 147.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 147.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 146.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 145.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 144.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 144.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 143.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 143.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 141.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 139.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 138.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 134.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 125.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 123.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 114.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 112.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 136.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 136.9
FF:10024-101D6 15,40,85 years, mixed 136.9

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