MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.9 nTPM
HPA:26.9 nTPM
GTEx:17.1 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:28.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
1827 Male, age 72, unknown 26.9
2586 Male, age 75, left hemisphere 26.9
2828 Female, age 72, unknown 26.6
2411 Female, age 72, unknown 26.3
2666 Male, age 74, left hemisphere 26.1
2219 Male, age 76, both hemispheres 25.5
1870 Female, age 42, unknown 25.4
1833 Male, age 53, unknown 24.5
1830 Male, age 51, unknown 24.2
2019 Male, age 18, unknown 23.6
Dorsal raphe nucleus
nTPM: 25.2
2750 Male, age 76, both hemispheres 26.1
2047 Male, age 72, unknown 26.0
2298 Female, age 72, unknown 25.5
1828 Male, age 53, unknown 25.0
2016 Female, age 72, unknown 23.6
Inferior colliculus
nTPM: 24.3
1848 Female, age 42, unknown 24.7
2097 Female, age 72, unknown 24.5
2849 Male, age 72, unknown 24.4
1890 Male, age 53, unknown 23.5
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Pedunculopontine tegmental nucleus
nTPM: 24.9
2334 Male, age 80, both hemispheres 26.9
1921 Female, age 85, both hemispheres 25.4
2338 Male, age 61, both hemispheres 22.4
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 26.3
2502 Female, age 75, unknown 26.3
1795 Male, age 51, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 24.4
1840 Male, age 53, unknown 25.5
2464 Female, age 72, unknown 24.9
1831 Male, age 72, unknown 23.8
2850 Male, age 76, both hemispheres 23.5
Periaquaductal grey, lateral
nTPM: 23.8
2053 Male, age 18, unknown 25.0
2140 Male, age 76, both hemispheres 23.4
2272 Male, age 74, both hemispheres 22.9
Pretectal area
nTPM: 25.2
2007 Male, age 72, unknown 26.5
2667 Female, age 75, unknown 26.2
2825 Male, age 18, unknown 26.1
1944 Female, age 72, unknown 25.9
1816 Male, age 51, unknown 25.8
1817 Female, age 42, unknown 25.5
1815 Male, age 53, unknown 25.4
2407 Male, age 75, both hemispheres 25.2
2224 Female, age 72, unknown 23.6
2316 Male, age 76, right hemisphere 23.6
2273 Male, age 74, both hemispheres 22.9
Red nucleus
nTPM: 24.8
2584 Male, age 75, left hemisphere 27.0
2769 Male, age 72, unknown 25.6
2588 Male, age 74, left hemisphere 25.5
1865 Male, age 51, unknown 25.3
1821 Female, age 72, unknown 25.1
1904 Male, age 53, unknown 24.8
2823 Male, age 76, right hemisphere 24.7
1954 Female, age 42, unknown 24.3
2227 Male, age 72, unknown 24.2
2503 Female, age 72, unknown 24.2
2725 Female, age 75, unknown 23.8
2785 Male, age 18, unknown 23.7
Substantia nigra
nTPM: 26.9
1916 Female, age 42, unknown 29.7
1851 Male, age 51, unknown 28.0
1941 Male, age 53, unknown 27.8
2665 Male, age 74, both hemispheres 27.1
2409 Female, age 72, unknown 26.6
2241 Male, age 72, unknown 26.4
1889 Female, age 72, unknown 26.2
2583 Male, age 75, right hemisphere 26.2
2699 Male, age 18, unknown 26.1
2590 Female, age 75, unknown 25.3
Superior colliculus
nTPM: 25.5
2261 Male, age 18, unknown 26.9
2668 Female, age 75, unknown 26.7
1796 Male, age 53, unknown 26.0
1839 Male, age 51, unknown 26.0
2664 Male, age 75, both hemispheres 26.0
1895 Male, age 76, right hemisphere 25.5
2087 Female, age 72, unknown 25.2
1913 Female, age 42, unknown 24.9
2587 Male, age 74, left hemisphere 24.6
1995 Male, age 72, unknown 23.2
Ventral tegmental area
nTPM: 25.4
2410 Female, age 72, unknown 27.2
2218 Male, age 76, both hemispheres 25.8
1915 Female, age 42, unknown 25.3
1942 Male, age 51, unknown 24.8
2021 Male, age 53, unknown 24.8
2223 Female, age 72, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.1
Samples: 139

Max nTPM: 27.1
Min nTPM: 11.3
Std nTPM: 2.9
Median nTPM: 17.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 24.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 24.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 22.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 22.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 21.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 21.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 21.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.6
FF:10158-103A5 76 years, female 35.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 13.2
Min nTPM: 11.4
Sample A Female 12.5
Sample B Female 11.4
Sample C Male 13.2
Sample D Male 11.5
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 10.6
Min nTPM: 9.8
Sample B Female 10.6
Sample C Male 9.8
Sample D Male 10.6
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 9.9
Sample A Female 12.0
Sample B Female 9.9
Sample C Male 13.4
Sample D Male 14.2
Superior colliculi
nTPM: 11.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.3
Sample A Female 10.2
Sample B Female 8.3
Sample C Male 12.7
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 30.4
Min nTPM: 26.8
Sample A Male 30.4
Sample B Male 26.8
Sample C Female 28.7
Sample D Female 27.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.