MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA:42.3 nTPM
GTEx:43.4 nTPM
FANTOM5:102.4 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:134.3 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2019 Male, age 18, unknown 41.6
1870 Female, age 42, unknown 37.6
2411 Female, age 72, unknown 37.6
2219 Male, age 76, both hemispheres 35.8
1830 Male, age 51, unknown 35.7
1827 Male, age 72, unknown 35.6
1833 Male, age 53, unknown 35.0
2666 Male, age 74, left hemisphere 34.6
2586 Male, age 75, left hemisphere 34.4
2828 Female, age 72, unknown 34.0
Dorsal raphe nucleus
nTPM: 39.6
1828 Male, age 53, unknown 44.3
2298 Female, age 72, unknown 41.4
2016 Female, age 72, unknown 38.5
2047 Male, age 72, unknown 38.3
2750 Male, age 76, both hemispheres 35.6
Inferior colliculus
nTPM: 36.9
2097 Female, age 72, unknown 39.2
1890 Male, age 53, unknown 38.7
1848 Female, age 42, unknown 35.1
2849 Male, age 72, unknown 34.5
Median raphe nucleus
nTPM: 38.1
2220 Male, age 76, midline 38.1
Pedunculopontine tegmental nucleus
nTPM: 35.9
1921 Female, age 85, both hemispheres 37.7
2334 Male, age 80, both hemispheres 37.1
2338 Male, age 61, both hemispheres 32.9
Periaquaductal grey, anterior
nTPM: 37.1
2502 Female, age 75, unknown 40.8
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 36.5
2850 Male, age 76, both hemispheres 37.6
1840 Male, age 53, unknown 37.1
1831 Male, age 72, unknown 36.7
2464 Female, age 72, unknown 34.5
Periaquaductal grey, lateral
nTPM: 36.1
2272 Male, age 74, both hemispheres 39.4
2140 Male, age 76, both hemispheres 34.5
2053 Male, age 18, unknown 34.3
Pretectal area
nTPM: 39.3
2273 Male, age 74, both hemispheres 45.7
1816 Male, age 51, unknown 41.6
1817 Female, age 42, unknown 40.9
2407 Male, age 75, both hemispheres 40.3
2007 Male, age 72, unknown 39.5
1944 Female, age 72, unknown 38.8
2667 Female, age 75, unknown 38.7
2224 Female, age 72, unknown 38.4
1815 Male, age 53, unknown 37.6
2825 Male, age 18, unknown 36.3
2316 Male, age 76, right hemisphere 34.1
Red nucleus
nTPM: 37.9
1821 Female, age 72, unknown 45.6
1865 Male, age 51, unknown 39.9
2785 Male, age 18, unknown 39.8
1954 Female, age 42, unknown 38.9
2725 Female, age 75, unknown 37.7
2227 Male, age 72, unknown 36.8
2503 Female, age 72, unknown 36.8
2823 Male, age 76, right hemisphere 36.7
1904 Male, age 53, unknown 36.6
2769 Male, age 72, unknown 36.5
2588 Male, age 74, left hemisphere 35.3
2584 Male, age 75, left hemisphere 34.3
Substantia nigra
nTPM: 42.3
2241 Male, age 72, unknown 51.4
1851 Male, age 51, unknown 44.4
1941 Male, age 53, unknown 44.4
1916 Female, age 42, unknown 44.2
2409 Female, age 72, unknown 42.6
2699 Male, age 18, unknown 42.0
2590 Female, age 75, unknown 40.4
1889 Female, age 72, unknown 39.2
2665 Male, age 74, both hemispheres 37.4
2583 Male, age 75, right hemisphere 36.9
Superior colliculus
nTPM: 36.8
2587 Male, age 74, left hemisphere 40.7
2664 Male, age 75, both hemispheres 39.9
2087 Female, age 72, unknown 38.5
1895 Male, age 76, right hemisphere 37.5
1995 Male, age 72, unknown 36.0
2261 Male, age 18, unknown 35.7
1913 Female, age 42, unknown 35.5
1839 Male, age 51, unknown 35.0
2668 Female, age 75, unknown 34.8
1796 Male, age 53, unknown 34.5
Ventral tegmental area
nTPM: 38.8
1915 Female, age 42, unknown 42.1
2410 Female, age 72, unknown 40.6
2223 Female, age 72, unknown 38.5
2218 Male, age 76, both hemispheres 37.9
1942 Male, age 51, unknown 37.0
2021 Male, age 53, unknown 36.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.4
Samples: 139

Max nTPM: 78.9
Min nTPM: 29.2
Std nTPM: 9.4
Median nTPM: 42.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 78.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 71.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 70.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 70.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 68.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 62.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 61.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 58.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 57.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.4
FF:10158-103A5 76 years, female 102.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.0
Pig sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 27.0
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 22.6
Sample C Male 27.0
Sample D Male 26.1
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 24.1
Min nTPM: 20.3
Sample B Female 20.5
Sample C Male 24.1
Sample D Male 20.3
Substantia nigra
nTPM: 22.1
Samples: 4

Max nTPM: 27.7
Min nTPM: 16.9
Sample A Female 27.7
Sample B Female 18.8
Sample C Male 25.1
Sample D Male 16.9
Superior colliculi
nTPM: 25.0
Samples: 4

Max nTPM: 29.5
Min nTPM: 19.6
Sample A Female 27.0
Sample B Female 19.6
Sample C Male 29.5
Sample D Male 23.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.4
Samples: 4

Max nTPM: 141.4
Min nTPM: 129.4
Sample A Male 130.4
Sample B Male 141.4
Sample C Female 136.2
Sample D Female 129.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
73994670 Antisense, RP_051214_03_E05, Mouse strain C57BL/6J (56 days, male) 2.3
69734608 Antisense, RP_050503_01_C06, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.