MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.7 nTPM
HPA:30.7 nTPM
GTEx:43.5 nTPM
FANTOM5:76.1 Scaled Tags Per Million
Pig:33.0 nTPM
Mouse:22.9 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2666 Male, age 74, left hemisphere 32.3
2586 Male, age 75, left hemisphere 32.2
2828 Female, age 72, unknown 31.0
2219 Male, age 76, both hemispheres 30.3
1870 Female, age 42, unknown 30.2
2019 Male, age 18, unknown 30.2
1833 Male, age 53, unknown 30.0
1830 Male, age 51, unknown 29.8
1827 Male, age 72, unknown 29.4
2411 Female, age 72, unknown 28.5
Dorsal raphe nucleus
nTPM: 28.8
2750 Male, age 76, both hemispheres 29.7
1828 Male, age 53, unknown 29.2
2047 Male, age 72, unknown 29.1
2016 Female, age 72, unknown 28.4
2298 Female, age 72, unknown 27.4
Inferior colliculus
nTPM: 28.9
2849 Male, age 72, unknown 30.2
1848 Female, age 42, unknown 29.1
1890 Male, age 53, unknown 28.7
2097 Female, age 72, unknown 27.6
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Pedunculopontine tegmental nucleus
nTPM: 29.6
2338 Male, age 61, both hemispheres 30.3
2334 Male, age 80, both hemispheres 29.9
1921 Female, age 85, both hemispheres 28.6
Periaquaductal grey, anterior
nTPM: 29.6
1795 Male, age 51, unknown 29.6
1947 Male, age 18, unknown 29.6
2502 Female, age 75, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 28.7
2850 Male, age 76, both hemispheres 31.0
1831 Male, age 72, unknown 28.6
1840 Male, age 53, unknown 27.7
2464 Female, age 72, unknown 27.5
Periaquaductal grey, lateral
nTPM: 28.9
2272 Male, age 74, both hemispheres 29.1
2140 Male, age 76, both hemispheres 28.9
2053 Male, age 18, unknown 28.8
Pretectal area
nTPM: 29.4
1817 Female, age 42, unknown 31.2
1816 Male, age 51, unknown 30.7
2007 Male, age 72, unknown 30.2
1815 Male, age 53, unknown 29.9
1944 Female, age 72, unknown 29.4
2825 Male, age 18, unknown 29.3
2224 Female, age 72, unknown 29.0
2407 Male, age 75, both hemispheres 28.7
2667 Female, age 75, unknown 28.5
2316 Male, age 76, right hemisphere 28.3
2273 Male, age 74, both hemispheres 28.1
Red nucleus
nTPM: 30.7
2725 Female, age 75, unknown 32.7
2588 Male, age 74, left hemisphere 31.6
1865 Male, age 51, unknown 31.3
2769 Male, age 72, unknown 30.9
1904 Male, age 53, unknown 30.7
2503 Female, age 72, unknown 30.7
2823 Male, age 76, right hemisphere 30.5
2584 Male, age 75, left hemisphere 30.4
1821 Female, age 72, unknown 30.3
2227 Male, age 72, unknown 30.1
1954 Female, age 42, unknown 29.8
2785 Male, age 18, unknown 29.8
Substantia nigra
nTPM: 30.0
1916 Female, age 42, unknown 31.4
2699 Male, age 18, unknown 31.2
1941 Male, age 53, unknown 30.7
2665 Male, age 74, both hemispheres 30.6
1851 Male, age 51, unknown 30.5
1889 Female, age 72, unknown 29.7
2590 Female, age 75, unknown 29.5
2409 Female, age 72, unknown 29.1
2583 Male, age 75, right hemisphere 29.1
2241 Male, age 72, unknown 28.5
Superior colliculus
nTPM: 29.6
2587 Male, age 74, left hemisphere 30.7
1796 Male, age 53, unknown 30.4
1913 Female, age 42, unknown 30.4
1995 Male, age 72, unknown 30.0
2261 Male, age 18, unknown 29.5
2668 Female, age 75, unknown 29.5
2087 Female, age 72, unknown 29.1
1895 Male, age 76, right hemisphere 29.0
2664 Male, age 75, both hemispheres 29.0
1839 Male, age 51, unknown 28.7
Ventral tegmental area
nTPM: 29.9
2223 Female, age 72, unknown 30.9
1915 Female, age 42, unknown 30.4
2218 Male, age 76, both hemispheres 30.4
2410 Female, age 72, unknown 29.7
1942 Male, age 51, unknown 29.0
2021 Male, age 53, unknown 28.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.5
Samples: 139

Max nTPM: 71.9
Min nTPM: 18.2
Std nTPM: 10.0
Median nTPM: 41.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 71.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 69.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 68.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 66.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 65.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 64.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 64.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 63.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 63.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 62.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 62.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.1
FF:10158-103A5 76 years, female 76.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.0
Pig sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 44.4
Min nTPM: 27.0
Sample A Female 44.4
Sample B Female 27.0
Sample C Male 31.8
Sample D Male 28.7
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 30.2
Min nTPM: 24.6
Sample B Female 24.6
Sample C Male 30.2
Sample D Male 26.4
Substantia nigra
nTPM: 31.5
Samples: 4

Max nTPM: 35.9
Min nTPM: 25.6
Sample A Female 32.1
Sample B Female 25.6
Sample C Male 32.4
Sample D Male 35.9
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 34.8
Min nTPM: 23.6
Sample A Female 34.8
Sample B Female 23.6
Sample C Male 32.0
Sample D Male 33.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 23.8
Min nTPM: 21.8
Sample A Male 23.6
Sample B Male 23.8
Sample C Female 22.6
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
68301658 Antisense, RP_041130_01_F02, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.