MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.7 nTPM
HPA:56.7 nTPM
GTEx:64.6 nTPM
FANTOM5:260.6 Scaled Tags Per Million
Pig:86.1 nTPM
Mouse:153.6 nTPM
Allen mouse:14.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
2019 Male, age 18, unknown 58.6
2666 Male, age 74, left hemisphere 55.8
2411 Female, age 72, unknown 52.8
1870 Female, age 42, unknown 52.3
1830 Male, age 51, unknown 49.6
1827 Male, age 72, unknown 49.4
1833 Male, age 53, unknown 49.4
2828 Female, age 72, unknown 47.0
2586 Male, age 75, left hemisphere 45.5
2219 Male, age 76, both hemispheres 44.8
Dorsal raphe nucleus
nTPM: 48.8
2750 Male, age 76, both hemispheres 53.2
2298 Female, age 72, unknown 52.4
1828 Male, age 53, unknown 49.3
2047 Male, age 72, unknown 48.8
2016 Female, age 72, unknown 40.5
Inferior colliculus
nTPM: 42.1
2097 Female, age 72, unknown 46.0
1848 Female, age 42, unknown 42.9
2849 Male, age 72, unknown 40.0
1890 Male, age 53, unknown 39.7
Median raphe nucleus
nTPM: 55.2
2220 Male, age 76, midline 55.2
Pedunculopontine tegmental nucleus
nTPM: 46.4
2334 Male, age 80, both hemispheres 54.3
1921 Female, age 85, both hemispheres 46.5
2338 Male, age 61, both hemispheres 38.2
Periaquaductal grey, anterior
nTPM: 49.8
2502 Female, age 75, unknown 56.0
1947 Male, age 18, unknown 49.2
1795 Male, age 51, unknown 44.2
Periaquaductal grey, dorsal
nTPM: 38.3
2464 Female, age 72, unknown 39.9
1831 Male, age 72, unknown 38.5
2850 Male, age 76, both hemispheres 37.4
1840 Male, age 53, unknown 37.3
Periaquaductal grey, lateral
nTPM: 38.8
2272 Male, age 74, both hemispheres 43.7
2053 Male, age 18, unknown 38.2
2140 Male, age 76, both hemispheres 34.6
Pretectal area
nTPM: 51.0
1817 Female, age 42, unknown 59.9
2007 Male, age 72, unknown 58.6
1815 Male, age 53, unknown 57.7
1816 Male, age 51, unknown 55.8
2407 Male, age 75, both hemispheres 52.2
1944 Female, age 72, unknown 51.9
2667 Female, age 75, unknown 49.3
2224 Female, age 72, unknown 48.2
2825 Male, age 18, unknown 45.5
2273 Male, age 74, both hemispheres 41.9
2316 Male, age 76, right hemisphere 39.8
Red nucleus
nTPM: 53.4
1821 Female, age 72, unknown 67.1
1865 Male, age 51, unknown 57.8
1904 Male, age 53, unknown 56.6
1954 Female, age 42, unknown 55.7
2785 Male, age 18, unknown 54.7
2503 Female, age 72, unknown 53.4
2227 Male, age 72, unknown 51.0
2769 Male, age 72, unknown 50.0
2584 Male, age 75, left hemisphere 49.7
2725 Female, age 75, unknown 49.4
2588 Male, age 74, left hemisphere 48.2
2823 Male, age 76, right hemisphere 47.3
Substantia nigra
nTPM: 56.7
1916 Female, age 42, unknown 66.7
1851 Male, age 51, unknown 66.1
2241 Male, age 72, unknown 63.9
1941 Male, age 53, unknown 58.6
1889 Female, age 72, unknown 57.5
2665 Male, age 74, both hemispheres 53.2
2699 Male, age 18, unknown 53.2
2583 Male, age 75, right hemisphere 50.3
2590 Female, age 75, unknown 49.2
2409 Female, age 72, unknown 48.5
Superior colliculus
nTPM: 49.4
2587 Male, age 74, left hemisphere 57.0
2668 Female, age 75, unknown 55.3
2087 Female, age 72, unknown 50.3
1796 Male, age 53, unknown 50.0
2261 Male, age 18, unknown 49.4
1913 Female, age 42, unknown 48.2
1895 Male, age 76, right hemisphere 47.2
1839 Male, age 51, unknown 46.3
2664 Male, age 75, both hemispheres 45.9
1995 Male, age 72, unknown 44.0
Ventral tegmental area
nTPM: 53.0
2410 Female, age 72, unknown 63.0
1915 Female, age 42, unknown 56.2
2223 Female, age 72, unknown 55.6
2218 Male, age 76, both hemispheres 53.3
1942 Male, age 51, unknown 45.0
2021 Male, age 53, unknown 44.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.6
Samples: 139

Max nTPM: 111.0
Min nTPM: 42.9
Std nTPM: 13.3
Median nTPM: 61.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 111.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 104.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 99.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 94.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 93.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 92.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 92.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 89.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 89.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 88.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 260.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 260.6
FF:10158-103A5 76 years, female 260.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.1
Pig sample Sample description nTPM
Midbrain
nTPM: 84.3
Samples: 4

Max nTPM: 99.5
Min nTPM: 67.4
Sample A Female 99.5
Sample B Female 67.4
Sample C Male 94.7
Sample D Male 75.6
Periaqueductal gray
nTPM: 72.5
Samples: 3

Max nTPM: 82.1
Min nTPM: 65.6
Sample B Female 69.9
Sample C Male 82.1
Sample D Male 65.6
Substantia nigra
nTPM: 79.0
Samples: 4

Max nTPM: 92.0
Min nTPM: 69.1
Sample A Female 92.0
Sample B Female 69.1
Sample C Male 83.1
Sample D Male 71.6
Superior colliculi
nTPM: 86.1
Samples: 4

Max nTPM: 98.9
Min nTPM: 75.9
Sample A Female 90.9
Sample B Female 75.9
Sample C Male 98.9
Sample D Male 78.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 153.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.6
Samples: 4

Max nTPM: 170.9
Min nTPM: 143.0
Sample A Male 143.0
Sample B Male 150.2
Sample C Female 170.9
Sample D Female 150.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.6
71616360 Antisense, RP_050927_02_G05, Mouse strain C57BL/6J (56 days, male) 14.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.