MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:157.1 nTPM
HPA:157.1 nTPM
GTEx:155.8 nTPM
FANTOM5:87.0 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:67.0 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 157.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 157.1
2666 Male, age 74, left hemisphere 186.1
2586 Male, age 75, left hemisphere 185.3
2019 Male, age 18, unknown 168.4
1827 Male, age 72, unknown 156.7
1830 Male, age 51, unknown 155.8
2828 Female, age 72, unknown 155.6
2411 Female, age 72, unknown 151.4
1833 Male, age 53, unknown 142.0
1870 Female, age 42, unknown 135.0
2219 Male, age 76, both hemispheres 134.4
Dorsal raphe nucleus
nTPM: 130.4
2016 Female, age 72, unknown 139.6
1828 Male, age 53, unknown 134.2
2047 Male, age 72, unknown 130.0
2750 Male, age 76, both hemispheres 125.1
2298 Female, age 72, unknown 123.3
Inferior colliculus
nTPM: 138.2
2849 Male, age 72, unknown 141.6
1890 Male, age 53, unknown 140.9
1848 Female, age 42, unknown 136.5
2097 Female, age 72, unknown 133.8
Median raphe nucleus
nTPM: 125.5
2220 Male, age 76, midline 125.5
Pedunculopontine tegmental nucleus
nTPM: 135.0
2334 Male, age 80, both hemispheres 137.8
1921 Female, age 85, both hemispheres 134.2
2338 Male, age 61, both hemispheres 132.9
Periaquaductal grey, anterior
nTPM: 145.4
1795 Male, age 51, unknown 149.0
1947 Male, age 18, unknown 144.2
2502 Female, age 75, unknown 143.1
Periaquaductal grey, dorsal
nTPM: 137.6
2464 Female, age 72, unknown 144.6
1831 Male, age 72, unknown 140.2
1840 Male, age 53, unknown 133.1
2850 Male, age 76, both hemispheres 132.7
Periaquaductal grey, lateral
nTPM: 132.6
2053 Male, age 18, unknown 141.1
2140 Male, age 76, both hemispheres 128.7
2272 Male, age 74, both hemispheres 128.0
Pretectal area
nTPM: 153.1
2007 Male, age 72, unknown 187.3
1944 Female, age 72, unknown 176.5
1815 Male, age 53, unknown 175.2
1816 Male, age 51, unknown 171.9
2407 Male, age 75, both hemispheres 165.5
1817 Female, age 42, unknown 161.6
2316 Male, age 76, right hemisphere 136.2
2667 Female, age 75, unknown 131.0
2825 Male, age 18, unknown 127.6
2224 Female, age 72, unknown 126.9
2273 Male, age 74, both hemispheres 124.2
Red nucleus
nTPM: 154.6
2588 Male, age 74, left hemisphere 186.9
2785 Male, age 18, unknown 178.4
2584 Male, age 75, left hemisphere 177.0
2823 Male, age 76, right hemisphere 158.7
1865 Male, age 51, unknown 155.8
2725 Female, age 75, unknown 149.1
2503 Female, age 72, unknown 146.4
2769 Male, age 72, unknown 143.3
1954 Female, age 42, unknown 143.1
2227 Male, age 72, unknown 141.0
1904 Male, age 53, unknown 139.0
1821 Female, age 72, unknown 136.8
Substantia nigra
nTPM: 147.8
2583 Male, age 75, right hemisphere 165.1
2590 Female, age 75, unknown 163.5
2665 Male, age 74, both hemispheres 163.2
1941 Male, age 53, unknown 155.7
1889 Female, age 72, unknown 154.8
2409 Female, age 72, unknown 145.1
1851 Male, age 51, unknown 138.8
2241 Male, age 72, unknown 132.1
1916 Female, age 42, unknown 130.1
2699 Male, age 18, unknown 129.2
Superior colliculus
nTPM: 155.0
2668 Female, age 75, unknown 168.5
2087 Female, age 72, unknown 165.4
2664 Male, age 75, both hemispheres 163.2
2261 Male, age 18, unknown 158.3
1913 Female, age 42, unknown 156.4
1995 Male, age 72, unknown 155.8
1796 Male, age 53, unknown 151.0
2587 Male, age 74, left hemisphere 145.8
1895 Male, age 76, right hemisphere 143.2
1839 Male, age 51, unknown 142.1
Ventral tegmental area
nTPM: 135.8
2410 Female, age 72, unknown 160.3
2021 Male, age 53, unknown 135.1
1942 Male, age 51, unknown 132.5
2218 Male, age 76, both hemispheres 132.4
2223 Female, age 72, unknown 129.7
1915 Female, age 42, unknown 125.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 155.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.8
Samples: 139

Max nTPM: 265.1
Min nTPM: 77.4
Std nTPM: 37.1
Median nTPM: 146.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 265.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 256.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 250.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 248.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 241.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 239.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 233.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 222.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 221.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 220.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 218.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.0
FF:10158-103A5 76 years, female 87.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.5
Pig sample Sample description nTPM
Midbrain
nTPM: 44.5
Samples: 4

Max nTPM: 61.0
Min nTPM: 31.1
Sample A Female 33.7
Sample B Female 31.1
Sample C Male 61.0
Sample D Male 52.3
Periaqueductal gray
nTPM: 34.0
Samples: 3

Max nTPM: 40.5
Min nTPM: 30.0
Sample B Female 31.4
Sample C Male 40.5
Sample D Male 30.0
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 44.2
Min nTPM: 35.8
Sample A Female 39.3
Sample B Female 40.2
Sample C Male 44.2
Sample D Male 35.8
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 52.8
Min nTPM: 41.9
Sample A Female 41.9
Sample B Female 43.2
Sample C Male 48.3
Sample D Male 52.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.0
Samples: 4

Max nTPM: 69.8
Min nTPM: 64.0
Sample A Male 64.0
Sample B Male 65.3
Sample C Female 69.8
Sample D Female 69.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
68844235 Antisense, RP_050222_01_B09, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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