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BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:168.2 nTPM
HPA:168.2 nTPM
FANTOM5:108.6 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:71.1 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 168.2
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 140.0
1920 Male, age 76, both hemispheres 140.0
Anterior funiculus (white matter)
nTPM: 121.8
2819 Male, age 47, both hemispheres 129.5
2193 Male, age 75, both hemispheres 128.1
2734 Male, age 80, both hemispheres 116.8
2818 Female, age 79, both hemispheres 113.0
Area striata (white matter)
nTPM: 157.6
2258 Female, age 91, left hemisphere 157.6
Cerebellar white matter
nTPM: 138.9
2174 Male, age 61, right hemisphere 144.5
1864 Male, age 80, left hemisphere 142.4
1837 Male, age 76, left hemisphere 139.9
1931 Female, age 91, left hemisphere 139.2
2105 Male, age 74, right hemisphere 133.6
2773 Female, age 85, right hemisphere 133.6
Corpus callosum, genu (white matter)
nTPM: 140.6
1849 Female, age 91, right hemisphere 162.9
1887 Male, age 76, left hemisphere 158.1
1886 Female, age 67, right hemisphere 140.3
1885 Female, age 94, left hemisphere 130.4
1934 Male, age 61, right hemisphere 128.0
2771 Male, age 75, left hemisphere 123.6
Corpus callosum, splenium (white matter)
nTPM: 140.4
1946 Male, age 76, left hemisphere 153.4
2238 Female, age 94, right hemisphere 146.3
2104 Male, age 75, left hemisphere 143.3
2847 Female, age 67, right hemisphere 118.5
Dorsal funiculus (white matter)
nTPM: 123.8
2817 Male, age 47, both hemispheres 127.5
2812 Male, age 66, both hemispheres 124.3
2128 Male, age 75, both hemispheres 124.1
2810 Male, age 90, both hemispheres 121.9
2064 Female, age 79, both hemispheres 121.1
Lateral funiculus (white matter)
nTPM: 117.5
2192 Male, age 75, both hemispheres 131.7
2094 Female, age 79, both hemispheres 119.8
2099 Male, age 90, both hemispheres 112.7
2294 Male, age 66, both hemispheres 105.7
Occipital cortex (white matter)
nTPM: 137.3
2257 Female, age 67, both hemispheres 144.7
2259 Male, age 75, midline 129.9
Parahippocampal cortex (white matter)
nTPM: 138.0
2157 Female, age 91, both hemispheres 138.0
Parieto-temporal junction (white matter)
nTPM: 158.1
2469 Male, age 75, right hemisphere 179.6
2121 Male, age 76, left hemisphere 168.5
2770 Female, age 91, right hemisphere 166.0
1935 Female, age 94, right hemisphere 161.4
2774 Male, age 61, right hemisphere 150.8
1999 Female, age 67, right hemisphere 122.5
Somatomor cortex, precentral gyrus (white matter)
nTPM: 168.2
2439 Male, age 75, right hemisphere 168.2
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 147.9
2623 Male, age 75, right hemisphere 147.9
Temporal white matter
nTPM: 166.3
2523 Female, age 94, left hemisphere 174.4
2254 Male, age 75, right hemisphere 172.1
2736 Female, age 91, right hemisphere 165.0
1801 Male, age 76, left hemisphere 163.9
2524 Female, age 85, left hemisphere 156.2

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 108.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 108.6
FF:10042-101F6 24-68 years, mixed 108.6

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27.8
Pig sample Sample description nTPM
Corpus callosum
nTPM: 27.8
Samples: 4

Max nTPM: 30.8
Min nTPM: 25.3
Sample A Female 25.3
Sample B Female 25.8
Sample C Male 30.8
Sample D Male 29.4

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 71.1
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 71.1
Samples: 3

Max nTPM: 80.7
Min nTPM: 58.2
Sample A Male 74.4
Sample B Male 80.7
Sample D Female 58.2

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by the Knut & Alice Wallenberg Foundation.