MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2042.0 nTPM
HPA:2042.0 nTPM
GTEx:2952.8 nTPM
FANTOM5:1137.5 Scaled Tags Per Million
Pig:870.8 nTPM
Mouse:178.8 nTPM
Allen mouse:13.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2042.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1918.5
2666 Male, age 74, left hemisphere 2000.8
1870 Female, age 42, unknown 1962.4
1830 Male, age 51, unknown 1954.5
1833 Male, age 53, unknown 1942.2
2019 Male, age 18, unknown 1918.5
2828 Female, age 72, unknown 1914.3
2411 Female, age 72, unknown 1910.4
2219 Male, age 76, both hemispheres 1883.8
1827 Male, age 72, unknown 1864.4
2586 Male, age 75, left hemisphere 1833.3
Dorsal raphe nucleus
nTPM: 1950.6
2298 Female, age 72, unknown 1987.7
2016 Female, age 72, unknown 1981.2
1828 Male, age 53, unknown 1942.5
2750 Male, age 76, both hemispheres 1942.4
2047 Male, age 72, unknown 1899.4
Inferior colliculus
nTPM: 1900.6
1890 Male, age 53, unknown 1945.6
2849 Male, age 72, unknown 1897.9
2097 Female, age 72, unknown 1887.6
1848 Female, age 42, unknown 1871.1
Median raphe nucleus
nTPM: 1990.3
2220 Male, age 76, midline 1990.3
Pedunculopontine tegmental nucleus
nTPM: 1999.3
2338 Male, age 61, both hemispheres 2097.0
2334 Male, age 80, both hemispheres 2029.8
1921 Female, age 85, both hemispheres 1870.9
Periaquaductal grey, anterior
nTPM: 1922.7
2502 Female, age 75, unknown 1979.1
1947 Male, age 18, unknown 1917.5
1795 Male, age 51, unknown 1871.4
Periaquaductal grey, dorsal
nTPM: 1923.0
2850 Male, age 76, both hemispheres 1988.9
1831 Male, age 72, unknown 1946.4
1840 Male, age 53, unknown 1892.7
2464 Female, age 72, unknown 1863.9
Periaquaductal grey, lateral
nTPM: 1905.0
2053 Male, age 18, unknown 1924.8
2272 Male, age 74, both hemispheres 1895.2
2140 Male, age 76, both hemispheres 1895.1
Pretectal area
nTPM: 1894.7
1815 Male, age 53, unknown 1945.6
2316 Male, age 76, right hemisphere 1930.3
2224 Female, age 72, unknown 1928.4
1817 Female, age 42, unknown 1924.1
2407 Male, age 75, both hemispheres 1914.3
2825 Male, age 18, unknown 1907.3
2273 Male, age 74, both hemispheres 1879.6
1944 Female, age 72, unknown 1873.2
2007 Male, age 72, unknown 1856.8
2667 Female, age 75, unknown 1842.6
1816 Male, age 51, unknown 1839.1
Red nucleus
nTPM: 1965.6
1821 Female, age 72, unknown 2058.1
1865 Male, age 51, unknown 2036.0
2503 Female, age 72, unknown 2027.1
2584 Male, age 75, left hemisphere 1987.7
1904 Male, age 53, unknown 1985.2
2725 Female, age 75, unknown 1968.7
2769 Male, age 72, unknown 1934.8
2227 Male, age 72, unknown 1934.3
1954 Female, age 42, unknown 1930.9
2823 Male, age 76, right hemisphere 1920.7
2785 Male, age 18, unknown 1915.1
2588 Male, age 74, left hemisphere 1888.4
Substantia nigra
nTPM: 2042.0
2241 Male, age 72, unknown 2192.7
2699 Male, age 18, unknown 2181.7
2409 Female, age 72, unknown 2130.0
1851 Male, age 51, unknown 2111.1
2665 Male, age 74, both hemispheres 2067.5
1916 Female, age 42, unknown 2006.5
2590 Female, age 75, unknown 1983.1
1889 Female, age 72, unknown 1954.4
1941 Male, age 53, unknown 1944.6
2583 Male, age 75, right hemisphere 1848.6
Superior colliculus
nTPM: 1931.2
2587 Male, age 74, left hemisphere 2090.1
1913 Female, age 42, unknown 2006.1
1995 Male, age 72, unknown 1995.5
2668 Female, age 75, unknown 1962.6
1839 Male, age 51, unknown 1927.3
2664 Male, age 75, both hemispheres 1894.3
1796 Male, age 53, unknown 1875.8
1895 Male, age 76, right hemisphere 1863.0
2087 Female, age 72, unknown 1857.2
2261 Male, age 18, unknown 1840.3
Ventral tegmental area
nTPM: 2008.4
1915 Female, age 42, unknown 2096.4
2223 Female, age 72, unknown 2038.2
2021 Male, age 53, unknown 2023.7
2218 Male, age 76, both hemispheres 1973.3
2410 Female, age 72, unknown 1965.1
1942 Male, age 51, unknown 1953.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2952.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2952.8
Samples: 139

Max nTPM: 7444.1
Min nTPM: 1257.4
Std nTPM: 1057.1
Median nTPM: 2683.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7444.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 7184.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5964.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5490.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5490.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 5235.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 5101.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4967.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4843.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 4822.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 4765.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1137.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1137.5
FF:10158-103A5 76 years, female 1137.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 870.8
Pig sample Sample description nTPM
Midbrain
nTPM: 811.9
Samples: 4

Max nTPM: 1282.4
Min nTPM: 540.1
Sample A Female 1282.4
Sample B Female 845.2
Sample C Male 580.0
Sample D Male 540.1
Periaqueductal gray
nTPM: 730.6
Samples: 3

Max nTPM: 795.8
Min nTPM: 676.5
Sample B Female 676.5
Sample C Male 795.8
Sample D Male 719.6
Substantia nigra
nTPM: 870.8
Samples: 4

Max nTPM: 1080.3
Min nTPM: 774.2
Sample A Female 1080.3
Sample B Female 837.0
Sample C Male 774.2
Sample D Male 791.6
Superior colliculi
nTPM: 832.2
Samples: 4

Max nTPM: 951.5
Min nTPM: 728.9
Sample A Female 951.5
Sample B Female 900.0
Sample C Male 728.9
Sample D Male 748.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.8
Samples: 4

Max nTPM: 198.6
Min nTPM: 153.3
Sample A Male 195.6
Sample B Male 153.3
Sample C Female 167.6
Sample D Female 198.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.9
71378554 Antisense, RP_050517_01_A10, Mouse strain C57BL/6J (56 days, male) 13.9

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The Human Protein Atlas project is funded
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