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TPT1
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2206.2 nTPM
HPA:2206.2 nTPM
GTEx:3444.5 nTPM
FANTOM5:1320.0 Scaled Tags Per Million
Pig:1159.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 2206.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2025.4
1981 Female, age 72, midline 2149.9
2048 Male, age 55, midline 2096.5
2565 Male, age 75, midline 2049.9
2816 Male, age 47, midline 1929.9
2194 Female, age 79, both hemispheres 1901.0
Cervical spinal cord, dorsal horn
nTPM: 2070.5
2173 Female, age 72, unknown 2260.0
2069 Male, age 47, both hemispheres 2176.4
2296 Male, age 66, both hemispheres 2159.5
1877 Male, age 55, unknown 2074.2
2721 Male, age 90, both hemispheres 1910.9
2297 Male, age 75, both hemispheres 1842.3
Cervical spinal cord, ventral horn
nTPM: 2206.2
2480 Male, age 75, both hemispheres 2441.1
2098 Female, age 72, unknown 2401.5
2809 Male, age 90, both hemispheres 2339.3
2295 Male, age 66, both hemispheres 2188.9
2068 Male, age 55, unknown 2019.9
2820 Female, age 79, both hemispheres 1846.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3444.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 3444.5
Samples: 159

Max nTPM: 7285.3
Min nTPM: 1358.5
Std nTPM: 1114.9
Median nTPM: 3227.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7285.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 6664.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 6454.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 6218.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 6031.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 6022.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 5932.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 5746.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5567.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 5560.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 5482.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 5423.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 5383.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 5301.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 5241.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 5117.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 5075.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 4986.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 4981.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 4942.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 4833.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 4727.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 4688.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 4624.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 4442.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 4433.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4424.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 4397.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 4313.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4292.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 4247.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 4241.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 4209.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 4127.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 4121.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4077.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 4071.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 4055.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 4040.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 3987.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3969.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 3911.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3880.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3877.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3874.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3823.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3816.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 3814.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 3804.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 3789.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3771.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3708.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3687.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3679.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 3677.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3627.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3607.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3599.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 3579.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3568.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3563.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 3534.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 3503.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 3463.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3451.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 3447.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 3429.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 3416.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 3396.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3385.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 3340.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 3327.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3320.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3317.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 3283.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3263.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3257.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 3244.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 3228.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3227.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 3215.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 3194.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3188.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 3188.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3183.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 3118.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3097.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 3090.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3072.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3068.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 3040.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3029.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 3029.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3023.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3022.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3019.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3011.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3003.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 3000.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2989.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2979.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2971.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2956.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2905.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2898.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2891.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2888.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2876.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2870.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2868.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2827.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2825.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2815.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 2814.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2809.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2804.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2786.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2764.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2721.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2714.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2697.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2675.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 2641.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 2625.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2624.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2615.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2589.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2585.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 2566.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2535.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2453.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2399.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2362.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2336.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2323.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2321.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 2309.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2301.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2293.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2283.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2277.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2195.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2191.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2183.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2166.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2154.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2123.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2117.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2091.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2009.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1995.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1995.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1985.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1983.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1749.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1621.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1600.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1506.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1358.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1320.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1320.0
FF:10159-103A6 76 years, female 1478.8
FF:10181-103D1 60 years, female 1161.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1159.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1159.5
Samples: 4

Max nTPM: 1633.9
Min nTPM: 797.0
Sample A Female 797.0
Sample B Female 1254.6
Sample C Male 1633.9
Sample D Male 952.5
Ventral spinal cord
nTPM: 1052.0
Samples: 4

Max nTPM: 1200.3
Min nTPM: 902.2
Sample A Female 902.2
Sample B Female 1007.0
Sample C Male 1200.3
Sample D Male 1098.4

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