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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:133.5 nTPM
HPA:133.5 nTPM
GTEx:222.8 nTPM
FANTOM5:405.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 133.5
Sample id Sample description nTPM
Amygdala
nTPM: 114.0
1987 Female, age 91, left hemisphere 116.1
2517 Female, age 94, left hemisphere 116.1
2514 Male, age 75, right hemisphere 114.5
2814 Male, age 76, right hemisphere 114.0
2695 Female, age 67, right hemisphere 109.4
Basal amygdala
nTPM: 120.9
2243 Female, age 91, right hemisphere 137.5
2110 Male, age 80, left hemisphere 125.2
2685 Female, age 94, left hemisphere 119.7
1955 Male, age 76, both hemispheres 116.3
2609 Male, age 75, right hemisphere 115.9
2827 Female, age 67, right hemisphere 110.9
Central amygdala
nTPM: 119.4
2239 Male, age 80, left hemisphere 129.0
2701 Female, age 91, right hemisphere 123.1
2826 Female, age 94, left hemisphere 116.5
1905 Male, age 76, both hemispheres 114.5
2515 Male, age 75, right hemisphere 113.9
Corticomedial amygdala
nTPM: 123.5
2242 Female, age 91, right hemisphere 134.8
2829 Male, age 80, left hemisphere 129.1
2429 Female, age 94, left hemisphere 124.0
2240 Male, age 76, both hemispheres 121.9
2535 Female, age 67, right hemisphere 118.1
2428 Male, age 75, right hemisphere 112.9
Lateral amygdala
nTPM: 113.9
2534 Female, age 94, left hemisphere 124.4
2255 Female, age 91, right hemisphere 115.2
2516 Male, age 75, right hemisphere 114.7
1883 Male, age 76, both hemispheres 114.2
2256 Male, age 80, left hemisphere 110.4
2830 Female, age 67, right hemisphere 104.7
Stria terminalis, bed nucleus
nTPM: 133.5
2486 Female, age 94, both hemispheres 138.5
1974 Female, age 91, both hemispheres 137.2
2201 Male, age 74, unknown 124.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 222.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 222.8
Samples: 152

Max nTPM: 617.4
Min nTPM: 36.0
Std nTPM: 97.3
Median nTPM: 206.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 617.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 550.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 544.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 483.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 430.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 410.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 394.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 380.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 379.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 365.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 360.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 358.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 355.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 353.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 350.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 349.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 331.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 327.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 320.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 316.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 315.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 313.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 313.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 311.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 310.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 310.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 309.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 302.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 301.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 300.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 299.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 299.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 296.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 291.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 288.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 286.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 282.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 280.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 280.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 280.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 279.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 278.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 271.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 267.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 265.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 265.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 262.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 260.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 256.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 255.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 255.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 254.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 251.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 251.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 250.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 246.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 245.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 244.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 239.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 235.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 232.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 228.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 228.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 225.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 224.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 221.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 219.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 219.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 216.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 215.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 213.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 212.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 212.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 209.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 208.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 207.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 205.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 204.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 204.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 203.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 203.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 201.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 200.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 200.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 196.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 195.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 194.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 194.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 194.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 193.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 188.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 186.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 184.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 184.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 182.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 180.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 178.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 175.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 170.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 169.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 165.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 163.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 163.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 162.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 161.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 159.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 158.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 158.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 158.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 158.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 157.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 155.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 154.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 154.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 152.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 151.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 150.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 150.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 149.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 149.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 149.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 148.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 146.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 142.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 141.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 140.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 137.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 135.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 134.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 133.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 131.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 124.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 124.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 122.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 118.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 114.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 108.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 101.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 96.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 92.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 90.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 90.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 88.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 88.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 88.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 74.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 65.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 53.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 405.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 405.2
FF:10151-102I7 76 years, female 405.2

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