MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:125.6 nTPM
HPA:125.6 nTPM
GTEx:144.0 nTPM
FANTOM5:149.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.8
2219 Male, age 76, both hemispheres 119.7
1827 Male, age 72, unknown 118.5
2666 Male, age 74, left hemisphere 118.3
1870 Female, age 42, unknown 116.1
2411 Female, age 72, unknown 112.7
2586 Male, age 75, left hemisphere 111.4
2828 Female, age 72, unknown 109.8
1833 Male, age 53, unknown 108.5
1830 Male, age 51, unknown 108.4
2019 Male, age 18, unknown 105.1
Dorsal raphe nucleus
nTPM: 112.4
2298 Female, age 72, unknown 117.7
2047 Male, age 72, unknown 115.3
2750 Male, age 76, both hemispheres 112.2
1828 Male, age 53, unknown 110.8
2016 Female, age 72, unknown 105.8
Inferior colliculus
nTPM: 114.4
2849 Male, age 72, unknown 118.1
2097 Female, age 72, unknown 116.8
1890 Male, age 53, unknown 111.4
1848 Female, age 42, unknown 111.2
Median raphe nucleus
nTPM: 125.6
2220 Male, age 76, midline 125.6
Pedunculopontine tegmental nucleus
nTPM: 116.9
1921 Female, age 85, both hemispheres 120.7
2334 Male, age 80, both hemispheres 118.6
2338 Male, age 61, both hemispheres 111.4
Periaquaductal grey, anterior
nTPM: 117.0
1947 Male, age 18, unknown 118.2
2502 Female, age 75, unknown 117.2
1795 Male, age 51, unknown 115.5
Periaquaductal grey, dorsal
nTPM: 115.0
1840 Male, age 53, unknown 118.7
2850 Male, age 76, both hemispheres 117.6
1831 Male, age 72, unknown 112.8
2464 Female, age 72, unknown 111.0
Periaquaductal grey, lateral
nTPM: 111.1
2140 Male, age 76, both hemispheres 114.5
2053 Male, age 18, unknown 114.3
2272 Male, age 74, both hemispheres 104.6
Pretectal area
nTPM: 114.9
1816 Male, age 51, unknown 123.1
2825 Male, age 18, unknown 120.9
2224 Female, age 72, unknown 120.7
1944 Female, age 72, unknown 118.8
2007 Male, age 72, unknown 116.8
1815 Male, age 53, unknown 115.9
1817 Female, age 42, unknown 115.1
2407 Male, age 75, both hemispheres 109.0
2316 Male, age 76, right hemisphere 108.9
2273 Male, age 74, both hemispheres 107.9
2667 Female, age 75, unknown 107.0
Red nucleus
nTPM: 108.3
2725 Female, age 75, unknown 116.5
2503 Female, age 72, unknown 111.7
1821 Female, age 72, unknown 111.3
2584 Male, age 75, left hemisphere 109.8
1954 Female, age 42, unknown 108.2
1865 Male, age 51, unknown 107.0
2588 Male, age 74, left hemisphere 106.3
1904 Male, age 53, unknown 105.9
2227 Male, age 72, unknown 105.9
2769 Male, age 72, unknown 105.6
2785 Male, age 18, unknown 105.6
2823 Male, age 76, right hemisphere 105.6
Substantia nigra
nTPM: 114.2
1916 Female, age 42, unknown 118.2
2241 Male, age 72, unknown 117.9
1941 Male, age 53, unknown 116.8
1889 Female, age 72, unknown 115.8
1851 Male, age 51, unknown 115.4
2409 Female, age 72, unknown 114.3
2590 Female, age 75, unknown 111.8
2699 Male, age 18, unknown 111.6
2665 Male, age 74, both hemispheres 111.1
2583 Male, age 75, right hemisphere 108.9
Superior colliculus
nTPM: 111.6
1796 Male, age 53, unknown 117.9
2261 Male, age 18, unknown 115.5
1895 Male, age 76, right hemisphere 113.7
2668 Female, age 75, unknown 112.5
2087 Female, age 72, unknown 112.2
2587 Male, age 74, left hemisphere 112.0
1839 Male, age 51, unknown 111.6
2664 Male, age 75, both hemispheres 109.2
1913 Female, age 42, unknown 107.7
1995 Male, age 72, unknown 103.6
Ventral tegmental area
nTPM: 115.0
1915 Female, age 42, unknown 119.1
2218 Male, age 76, both hemispheres 116.9
2223 Female, age 72, unknown 114.3
2410 Female, age 72, unknown 114.2
1942 Male, age 51, unknown 113.1
2021 Male, age 53, unknown 112.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 144.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 144.0
Samples: 139

Max nTPM: 387.8
Min nTPM: 54.0
Std nTPM: 51.6
Median nTPM: 138.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 387.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 279.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 268.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 267.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 260.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 240.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 233.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 233.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 232.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 228.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 223.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 149.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 149.7
FF:10158-103A5 76 years, female 149.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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