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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:157.9 nTPM
HPA:157.9 nTPM
GTEx:200.7 nTPM
FANTOM5:187.1 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 157.9
Sample id Sample description nTPM
Amygdala
nTPM: 151.3
2695 Female, age 67, right hemisphere 155.3
2814 Male, age 76, right hemisphere 152.5
2514 Male, age 75, right hemisphere 152.3
1987 Female, age 91, left hemisphere 148.6
2517 Female, age 94, left hemisphere 147.7
Basal amygdala
nTPM: 152.8
2243 Female, age 91, right hemisphere 157.1
2827 Female, age 67, right hemisphere 155.9
2685 Female, age 94, left hemisphere 152.6
1955 Male, age 76, both hemispheres 151.6
2110 Male, age 80, left hemisphere 151.4
2609 Male, age 75, right hemisphere 148.2
Central amygdala
nTPM: 154.2
2826 Female, age 94, left hemisphere 161.5
2239 Male, age 80, left hemisphere 154.7
2701 Female, age 91, right hemisphere 152.9
1905 Male, age 76, both hemispheres 151.8
2515 Male, age 75, right hemisphere 150.0
Corticomedial amygdala
nTPM: 157.9
2535 Female, age 67, right hemisphere 171.0
2242 Female, age 91, right hemisphere 161.5
2240 Male, age 76, both hemispheres 161.4
2829 Male, age 80, left hemisphere 153.2
2429 Female, age 94, left hemisphere 152.3
2428 Male, age 75, right hemisphere 148.2
Lateral amygdala
nTPM: 154.2
2830 Female, age 67, right hemisphere 156.9
2534 Female, age 94, left hemisphere 154.4
1883 Male, age 76, both hemispheres 154.2
2255 Female, age 91, right hemisphere 154.2
2516 Male, age 75, right hemisphere 153.3
2256 Male, age 80, left hemisphere 151.9
Stria terminalis, bed nucleus
nTPM: 152.6
2201 Male, age 74, unknown 154.1
2486 Female, age 94, both hemispheres 152.3
1974 Female, age 91, both hemispheres 151.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 200.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 200.7
Samples: 152

Max nTPM: 338.3
Min nTPM: 81.9
Std nTPM: 40.1
Median nTPM: 193.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 338.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 333.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 328.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 311.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 302.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 299.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 291.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 271.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 255.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 252.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 251.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 251.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 250.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 249.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 247.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 247.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 246.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 246.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 245.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 241.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 240.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 238.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 238.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 237.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 234.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 234.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 232.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 230.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 229.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 228.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 228.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 228.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 227.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 227.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 227.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 226.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 225.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 224.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 224.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 223.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 221.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 221.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 221.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 220.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 218.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 218.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 217.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 217.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 217.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 215.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 215.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 213.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 213.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 213.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 212.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 207.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 207.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 207.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 206.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 205.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 204.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 203.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 202.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 202.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 201.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 198.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 197.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 197.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 196.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 196.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 196.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 195.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 195.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 194.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 194.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 194.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 193.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 192.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 192.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 192.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 190.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 189.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 189.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 188.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 188.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 188.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 188.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 187.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 186.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 186.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 186.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 186.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 185.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 185.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 184.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 184.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 182.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 182.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 182.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 182.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 180.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 179.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 179.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 179.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 179.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 179.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 178.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 178.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 177.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 176.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 175.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 175.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 175.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 175.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 174.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 174.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 172.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 171.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 170.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 170.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 169.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 168.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 168.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 167.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 167.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 165.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 165.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 164.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 162.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 162.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 161.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 161.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 160.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 159.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 158.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 155.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 154.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 152.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 150.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 148.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 148.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 148.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 141.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 140.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 139.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 136.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 134.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 126.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 81.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 187.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 187.1
FF:10151-102I7 76 years, female 187.1

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