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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:125.3 nTPM
HPA:125.3 nTPM
GTEx:113.3 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:43.3 nTPM
Allen mouse:3.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 125.3
Sample id Sample description nTPM
Amygdala
nTPM: 125.3
2814 Male, age 76, right hemisphere 132.6
2695 Female, age 67, right hemisphere 129.0
2514 Male, age 75, right hemisphere 124.5
1987 Female, age 91, left hemisphere 121.8
2517 Female, age 94, left hemisphere 118.3
Basal amygdala
nTPM: 116.6
2609 Male, age 75, right hemisphere 123.1
1955 Male, age 76, both hemispheres 117.3
2110 Male, age 80, left hemisphere 116.6
2685 Female, age 94, left hemisphere 116.1
2827 Female, age 67, right hemisphere 114.3
2243 Female, age 91, right hemisphere 112.5
Central amygdala
nTPM: 123.3
1905 Male, age 76, both hemispheres 132.9
2826 Female, age 94, left hemisphere 125.2
2515 Male, age 75, right hemisphere 122.3
2701 Female, age 91, right hemisphere 120.2
2239 Male, age 80, left hemisphere 116.0
Corticomedial amygdala
nTPM: 115.1
2428 Male, age 75, right hemisphere 125.7
2240 Male, age 76, both hemispheres 118.2
2429 Female, age 94, left hemisphere 115.0
2829 Male, age 80, left hemisphere 111.7
2242 Female, age 91, right hemisphere 110.8
2535 Female, age 67, right hemisphere 108.8
Lateral amygdala
nTPM: 123.0
2516 Male, age 75, right hemisphere 130.3
1883 Male, age 76, both hemispheres 125.6
2830 Female, age 67, right hemisphere 123.3
2256 Male, age 80, left hemisphere 120.6
2534 Female, age 94, left hemisphere 119.2
2255 Female, age 91, right hemisphere 119.1
Stria terminalis, bed nucleus
nTPM: 113.8
1974 Female, age 91, both hemispheres 117.8
2201 Male, age 74, unknown 112.8
2486 Female, age 94, both hemispheres 110.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 113.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 113.3
Samples: 152

Max nTPM: 204.6
Min nTPM: 68.4
Std nTPM: 24.7
Median nTPM: 109.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 204.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 186.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 181.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 179.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 172.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 169.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 160.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 160.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 158.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 155.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 153.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 151.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 149.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 148.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 145.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 145.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 143.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 143.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 139.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 139.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 138.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 137.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 137.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 137.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 136.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 136.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 135.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 134.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 133.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 133.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 133.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 132.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 131.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 131.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 129.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 128.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 127.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 126.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 126.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 126.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 125.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 124.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 124.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 124.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 122.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 122.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 122.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 122.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 121.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 120.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 120.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 120.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 119.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 118.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 117.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 116.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 116.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 116.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 116.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 116.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 115.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 115.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 115.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 113.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 113.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 111.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 111.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 110.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 110.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 110.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 109.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 109.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 108.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 108.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 108.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 107.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 106.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 106.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 105.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 104.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 104.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 104.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 103.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 103.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 103.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 101.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 100.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 100.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 99.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 99.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 98.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 98.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 97.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 97.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 97.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 97.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 96.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 96.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 96.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 96.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 95.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 95.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 94.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 94.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 94.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 94.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 93.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 93.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 92.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 91.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 91.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 91.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 91.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 90.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 89.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 89.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 86.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 86.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 86.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 84.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 84.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 83.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 83.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 82.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 81.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 81.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 78.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 77.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 77.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 74.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 70.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 102.0
FF:10151-102I7 76 years, female 102.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.5
Pig sample Sample description nTPM
Amygdala
nTPM: 29.5
Samples: 4

Max nTPM: 33.4
Min nTPM: 26.5
Sample A Female 33.4
Sample B Female 26.5
Sample C Male 31.1
Sample D Male 27.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 43.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 43.3
Samples: 4

Max nTPM: 46.2
Min nTPM: 40.5
Sample A Male 46.2
Sample B Male 42.4
Sample C Female 44.0
Sample D Female 40.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.1
68442967 Antisense, RP_050111_01_B04, Mouse strain C57BL/6J (56 days, male) 6.1
70918772 Antisense, RP_050712_04_E01, Mouse strain C57BL/6J (56 days, male) 0.2

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