MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:137.4 nTPM
HPA:137.4 nTPM
GTEx:140.6 nTPM
FANTOM5:179.3 Scaled Tags Per Million
Pig:50.5 nTPM
Mouse:43.6 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.6
2019 Male, age 18, unknown 139.8
2411 Female, age 72, unknown 138.3
2666 Male, age 74, left hemisphere 135.1
1870 Female, age 42, unknown 133.7
1830 Male, age 51, unknown 132.5
1833 Male, age 53, unknown 132.5
2828 Female, age 72, unknown 130.2
1827 Male, age 72, unknown 126.2
2586 Male, age 75, left hemisphere 125.1
2219 Male, age 76, both hemispheres 112.2
Dorsal raphe nucleus
nTPM: 127.8
2750 Male, age 76, both hemispheres 137.3
2298 Female, age 72, unknown 127.7
2016 Female, age 72, unknown 126.3
1828 Male, age 53, unknown 124.8
2047 Male, age 72, unknown 122.8
Inferior colliculus
nTPM: 119.7
2097 Female, age 72, unknown 122.3
1890 Male, age 53, unknown 119.8
1848 Female, age 42, unknown 119.3
2849 Male, age 72, unknown 117.6
Median raphe nucleus
nTPM: 124.5
2220 Male, age 76, midline 124.5
Pedunculopontine tegmental nucleus
nTPM: 131.6
2338 Male, age 61, both hemispheres 144.6
2334 Male, age 80, both hemispheres 129.1
1921 Female, age 85, both hemispheres 121.1
Periaquaductal grey, anterior
nTPM: 123.4
2502 Female, age 75, unknown 127.8
1947 Male, age 18, unknown 121.7
1795 Male, age 51, unknown 120.6
Periaquaductal grey, dorsal
nTPM: 122.2
2464 Female, age 72, unknown 126.0
2850 Male, age 76, both hemispheres 125.6
1831 Male, age 72, unknown 118.7
1840 Male, age 53, unknown 118.6
Periaquaductal grey, lateral
nTPM: 125.6
2140 Male, age 76, both hemispheres 127.0
2272 Male, age 74, both hemispheres 126.2
2053 Male, age 18, unknown 123.6
Pretectal area
nTPM: 128.5
1817 Female, age 42, unknown 136.8
1815 Male, age 53, unknown 135.4
2007 Male, age 72, unknown 134.2
1944 Female, age 72, unknown 131.8
1816 Male, age 51, unknown 128.8
2825 Male, age 18, unknown 126.7
2316 Male, age 76, right hemisphere 126.2
2273 Male, age 74, both hemispheres 125.7
2667 Female, age 75, unknown 125.1
2407 Male, age 75, both hemispheres 124.7
2224 Female, age 72, unknown 118.5
Red nucleus
nTPM: 137.4
1904 Male, age 53, unknown 143.0
2785 Male, age 18, unknown 141.7
2503 Female, age 72, unknown 141.2
1865 Male, age 51, unknown 140.7
2227 Male, age 72, unknown 139.7
1821 Female, age 72, unknown 139.0
2823 Male, age 76, right hemisphere 139.0
2769 Male, age 72, unknown 136.4
1954 Female, age 42, unknown 135.7
2588 Male, age 74, left hemisphere 133.7
2725 Female, age 75, unknown 132.6
2584 Male, age 75, left hemisphere 126.7
Substantia nigra
nTPM: 126.8
2590 Female, age 75, unknown 133.7
1889 Female, age 72, unknown 133.0
2665 Male, age 74, both hemispheres 129.3
1851 Male, age 51, unknown 128.8
2409 Female, age 72, unknown 128.8
2583 Male, age 75, right hemisphere 127.8
2241 Male, age 72, unknown 123.1
1941 Male, age 53, unknown 122.7
2699 Male, age 18, unknown 122.5
1916 Female, age 42, unknown 118.3
Superior colliculus
nTPM: 129.6
1995 Male, age 72, unknown 143.1
1913 Female, age 42, unknown 140.6
2587 Male, age 74, left hemisphere 131.4
1895 Male, age 76, right hemisphere 130.9
2087 Female, age 72, unknown 128.5
2261 Male, age 18, unknown 126.7
1839 Male, age 51, unknown 125.5
1796 Male, age 53, unknown 125.4
2668 Female, age 75, unknown 125.1
2664 Male, age 75, both hemispheres 118.6
Ventral tegmental area
nTPM: 126.5
2410 Female, age 72, unknown 133.2
2223 Female, age 72, unknown 128.5
2021 Male, age 53, unknown 127.4
1942 Male, age 51, unknown 125.2
1915 Female, age 42, unknown 122.9
2218 Male, age 76, both hemispheres 121.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 140.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 140.6
Samples: 139

Max nTPM: 238.6
Min nTPM: 85.7
Std nTPM: 32.2
Median nTPM: 136.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 238.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 234.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 226.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 222.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 221.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 206.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 196.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 196.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 196.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 190.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 189.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 179.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 179.3
FF:10158-103A5 76 years, female 179.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.5
Pig sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 52.3
Min nTPM: 35.1
Sample A Female 48.7
Sample B Female 42.2
Sample C Male 52.3
Sample D Male 35.1
Periaqueductal gray
nTPM: 35.5
Samples: 3

Max nTPM: 39.0
Min nTPM: 28.4
Sample B Female 39.0
Sample C Male 39.0
Sample D Male 28.4
Substantia nigra
nTPM: 48.5
Samples: 4

Max nTPM: 66.5
Min nTPM: 33.7
Sample A Female 66.5
Sample B Female 38.2
Sample C Male 55.6
Sample D Male 33.7
Superior colliculi
nTPM: 50.5
Samples: 4

Max nTPM: 65.0
Min nTPM: 38.5
Sample A Female 51.8
Sample B Female 38.5
Sample C Male 65.0
Sample D Male 46.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 46.6
Min nTPM: 41.5
Sample A Male 44.7
Sample B Male 41.5
Sample C Female 41.6
Sample D Female 46.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68442967 Antisense, RP_050111_01_B04, Mouse strain C57BL/6J (56 days, male) 5.0
70918772 Antisense, RP_050712_04_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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