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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:140.4 nTPM
HPA:140.4 nTPM
GTEx:152.1 nTPM
FANTOM5:152.8 Scaled Tags Per Million
Pig:44.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 140.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 131.7
1981 Female, age 72, midline 142.1
2048 Male, age 55, midline 134.6
2194 Female, age 79, both hemispheres 133.3
2816 Male, age 47, midline 126.2
2565 Male, age 75, midline 122.2
Cervical spinal cord, dorsal horn
nTPM: 136.3
2173 Female, age 72, unknown 148.5
2296 Male, age 66, both hemispheres 145.7
2069 Male, age 47, both hemispheres 142.8
1877 Male, age 55, unknown 130.8
2297 Male, age 75, both hemispheres 127.7
2721 Male, age 90, both hemispheres 122.2
Cervical spinal cord, ventral horn
nTPM: 140.4
2098 Female, age 72, unknown 149.1
2809 Male, age 90, both hemispheres 149.1
2068 Male, age 55, unknown 137.7
2295 Male, age 66, both hemispheres 137.6
2480 Male, age 75, both hemispheres 137.5
2820 Female, age 79, both hemispheres 131.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 152.1
Samples: 159

Max nTPM: 277.8
Min nTPM: 84.2
Std nTPM: 32.0
Median nTPM: 149.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 277.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 239.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 222.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 215.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 209.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 205.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 205.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 204.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 203.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 203.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 202.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 200.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 197.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 197.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 193.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 192.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 191.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 191.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 190.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 190.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 189.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 189.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 187.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 187.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 187.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 185.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 185.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 183.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 183.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 181.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 181.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 179.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 179.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 179.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 178.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 177.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 176.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 176.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 175.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 175.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 174.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 174.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 173.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 172.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 172.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 170.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 170.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 168.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 166.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 165.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 165.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 164.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 163.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 163.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 162.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 160.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 159.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 159.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 158.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 158.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 157.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 156.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 156.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 156.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 155.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 153.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 153.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 152.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 152.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 152.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 151.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 151.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 151.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 151.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 150.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 150.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 149.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 149.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 149.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 149.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 149.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 149.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 148.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 148.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 148.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 148.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 147.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 147.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 147.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 146.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 146.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 145.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 145.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 144.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 144.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 144.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 144.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 143.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 142.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 141.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 141.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 141.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 141.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 140.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 140.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 140.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 140.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 139.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 139.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 136.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 132.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 131.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 130.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 130.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 129.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 129.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 129.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 128.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 128.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 128.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 128.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 127.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 126.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 125.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 125.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 124.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 124.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 122.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 122.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 121.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 119.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 117.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 117.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 116.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 115.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 115.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 115.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 114.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 113.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 113.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 112.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 112.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 111.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 109.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 109.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 107.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 104.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 103.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 102.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 100.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 91.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 89.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 87.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 85.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 84.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 152.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 152.8
FF:10181-103D1 60 years, female 158.7
FF:10159-103A6 76 years, female 146.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 38.8
Samples: 4

Max nTPM: 41.1
Min nTPM: 33.7
Sample A Female 41.1
Sample B Female 33.7
Sample C Male 40.4
Sample D Male 40.1
Ventral spinal cord
nTPM: 44.1
Samples: 4

Max nTPM: 46.1
Min nTPM: 42.8
Sample A Female 42.9
Sample B Female 46.1
Sample C Male 44.7
Sample D Male 42.8

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