MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:309.1 nTPM
HPA:309.1 nTPM
GTEx:372.9 nTPM
FANTOM5:568.4 Scaled Tags Per Million
Pig:385.1 nTPM
Mouse:783.2 nTPM
Allen mouse:23.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 309.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 279.9
2411 Female, age 72, unknown 330.6
1827 Male, age 72, unknown 312.0
1870 Female, age 42, unknown 302.5
2019 Male, age 18, unknown 281.7
1833 Male, age 53, unknown 276.3
2219 Male, age 76, both hemispheres 272.6
2666 Male, age 74, left hemisphere 269.7
2828 Female, age 72, unknown 262.7
1830 Male, age 51, unknown 261.5
2586 Male, age 75, left hemisphere 229.0
Dorsal raphe nucleus
nTPM: 291.8
2298 Female, age 72, unknown 345.8
2750 Male, age 76, both hemispheres 294.9
1828 Male, age 53, unknown 287.2
2047 Male, age 72, unknown 285.6
2016 Female, age 72, unknown 245.5
Inferior colliculus
nTPM: 277.8
2097 Female, age 72, unknown 308.4
1848 Female, age 42, unknown 284.6
1890 Male, age 53, unknown 259.5
2849 Male, age 72, unknown 258.5
Median raphe nucleus
nTPM: 295.5
2220 Male, age 76, midline 295.5
Pedunculopontine tegmental nucleus
nTPM: 292.2
2334 Male, age 80, both hemispheres 308.5
1921 Female, age 85, both hemispheres 308.0
2338 Male, age 61, both hemispheres 260.2
Periaquaductal grey, anterior
nTPM: 272.7
1947 Male, age 18, unknown 292.4
1795 Male, age 51, unknown 277.1
2502 Female, age 75, unknown 248.5
Periaquaductal grey, dorsal
nTPM: 256.1
1840 Male, age 53, unknown 261.9
1831 Male, age 72, unknown 257.9
2850 Male, age 76, both hemispheres 252.9
2464 Female, age 72, unknown 251.8
Periaquaductal grey, lateral
nTPM: 261.0
2272 Male, age 74, both hemispheres 285.5
2053 Male, age 18, unknown 266.8
2140 Male, age 76, both hemispheres 230.6
Pretectal area
nTPM: 299.5
2007 Male, age 72, unknown 333.3
1944 Female, age 72, unknown 333.2
1816 Male, age 51, unknown 330.5
1817 Female, age 42, unknown 323.6
2667 Female, age 75, unknown 314.0
2273 Male, age 74, both hemispheres 307.6
1815 Male, age 53, unknown 305.6
2224 Female, age 72, unknown 295.8
2825 Male, age 18, unknown 267.0
2407 Male, age 75, both hemispheres 246.0
2316 Male, age 76, right hemisphere 238.6
Red nucleus
nTPM: 262.3
1821 Female, age 72, unknown 333.3
1954 Female, age 42, unknown 277.7
2785 Male, age 18, unknown 269.4
2725 Female, age 75, unknown 264.7
2503 Female, age 72, unknown 259.9
1865 Male, age 51, unknown 257.2
1904 Male, age 53, unknown 255.1
2769 Male, age 72, unknown 254.4
2823 Male, age 76, right hemisphere 253.1
2227 Male, age 72, unknown 252.2
2588 Male, age 74, left hemisphere 240.0
2584 Male, age 75, left hemisphere 230.6
Substantia nigra
nTPM: 309.1
1916 Female, age 42, unknown 381.7
1941 Male, age 53, unknown 371.6
2241 Male, age 72, unknown 338.7
1889 Female, age 72, unknown 333.6
1851 Male, age 51, unknown 326.3
2409 Female, age 72, unknown 304.8
2699 Male, age 18, unknown 280.1
2583 Male, age 75, right hemisphere 267.5
2590 Female, age 75, unknown 253.6
2665 Male, age 74, both hemispheres 232.8
Superior colliculus
nTPM: 279.3
2668 Female, age 75, unknown 342.0
2587 Male, age 74, left hemisphere 304.2
1895 Male, age 76, right hemisphere 300.2
1796 Male, age 53, unknown 285.9
2087 Female, age 72, unknown 285.7
2261 Male, age 18, unknown 285.7
1839 Male, age 51, unknown 272.6
1913 Female, age 42, unknown 255.8
1995 Male, age 72, unknown 230.9
2664 Male, age 75, both hemispheres 230.2
Ventral tegmental area
nTPM: 298.7
2410 Female, age 72, unknown 348.3
2218 Male, age 76, both hemispheres 321.7
1915 Female, age 42, unknown 320.9
2223 Female, age 72, unknown 284.0
1942 Male, age 51, unknown 267.2
2021 Male, age 53, unknown 249.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 372.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 372.9
Samples: 139

Max nTPM: 1269.7
Min nTPM: 117.0
Std nTPM: 168.5
Median nTPM: 334.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1269.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1049.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 869.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 806.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 710.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 696.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 663.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 652.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 620.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 612.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 606.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 568.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 568.4
FF:10158-103A5 76 years, female 568.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 385.1
Pig sample Sample description nTPM
Midbrain
nTPM: 378.4
Samples: 4

Max nTPM: 481.7
Min nTPM: 307.7
Sample A Female 356.1
Sample B Female 307.7
Sample C Male 481.7
Sample D Male 368.1
Periaqueductal gray
nTPM: 284.3
Samples: 3

Max nTPM: 339.1
Min nTPM: 238.9
Sample B Female 274.8
Sample C Male 339.1
Sample D Male 238.9
Substantia nigra
nTPM: 356.2
Samples: 4

Max nTPM: 527.9
Min nTPM: 210.6
Sample A Female 527.9
Sample B Female 255.6
Sample C Male 430.5
Sample D Male 210.6
Superior colliculi
nTPM: 385.2
Samples: 4

Max nTPM: 501.0
Min nTPM: 233.0
Sample A Female 452.7
Sample B Female 233.0
Sample C Male 501.0
Sample D Male 353.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 783.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 783.2
Samples: 4

Max nTPM: 839.9
Min nTPM: 716.8
Sample A Male 716.8
Sample B Male 805.6
Sample C Female 839.9
Sample D Female 770.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.1
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 23.1
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 23.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.