We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RTN3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RTN3
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:329.2 nTPM
HPA:329.2 nTPM
GTEx:400.9 nTPM
FANTOM5:421.8 Scaled Tags Per Million
Pig:407.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 329.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 285.9
1981 Female, age 72, midline 324.2
2194 Female, age 79, both hemispheres 295.4
2048 Male, age 55, midline 277.7
2816 Male, age 47, midline 271.4
2565 Male, age 75, midline 261.0
Cervical spinal cord, dorsal horn
nTPM: 329.2
2296 Male, age 66, both hemispheres 435.0
2173 Female, age 72, unknown 383.5
2069 Male, age 47, both hemispheres 329.5
2297 Male, age 75, both hemispheres 291.4
1877 Male, age 55, unknown 291.1
2721 Male, age 90, both hemispheres 244.8
Cervical spinal cord, ventral horn
nTPM: 276.0
2068 Male, age 55, unknown 310.9
2098 Female, age 72, unknown 297.9
2820 Female, age 79, both hemispheres 297.2
2480 Male, age 75, both hemispheres 267.0
2295 Male, age 66, both hemispheres 245.6
2809 Male, age 90, both hemispheres 237.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 400.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 400.9
Samples: 159

Max nTPM: 641.3
Min nTPM: 152.1
Std nTPM: 100.3
Median nTPM: 393.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 641.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 625.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 625.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 607.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 602.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 601.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 591.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 586.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 586.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 582.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 569.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 547.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 544.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 539.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 536.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 536.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 533.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 530.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 528.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 528.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 513.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 513.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 512.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 511.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 509.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 500.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 500.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 499.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 496.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 495.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 487.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 486.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 486.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 486.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 484.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 481.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 477.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 477.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 467.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 467.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 466.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 464.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 461.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 460.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 459.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 457.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 454.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 453.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 453.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 451.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 448.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 447.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 446.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 444.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 444.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 444.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 441.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 439.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 436.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 436.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 430.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 430.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 425.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 425.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 422.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 417.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 415.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 414.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 410.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 409.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 406.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 402.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 400.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 399.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 398.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 397.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 394.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 394.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 394.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 393.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 391.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 390.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 387.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 382.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 382.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 381.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 380.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 378.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 376.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 376.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 375.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 373.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 373.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 373.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 372.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 372.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 367.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 365.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 365.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 364.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 364.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 363.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 362.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 361.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 361.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 358.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 358.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 355.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 355.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 350.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 350.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 345.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 344.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 344.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 342.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 340.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 338.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 335.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 334.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 334.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 333.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 332.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 323.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 323.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 322.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 314.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 312.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 312.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 311.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 310.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 301.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 301.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 301.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 301.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 299.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 293.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 291.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 288.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 284.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 281.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 278.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 276.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 275.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 274.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 272.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 272.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 268.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 262.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 260.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 253.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 235.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 232.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 228.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 227.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 214.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 206.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 189.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 189.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 152.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 421.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 421.8
FF:10159-103A6 76 years, female 427.9
FF:10181-103D1 60 years, female 415.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 407.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 304.9
Samples: 4

Max nTPM: 396.2
Min nTPM: 219.8
Sample A Female 396.2
Sample B Female 270.3
Sample C Male 219.8
Sample D Male 333.3
Ventral spinal cord
nTPM: 407.2
Samples: 4

Max nTPM: 460.7
Min nTPM: 363.7
Sample A Female 460.7
Sample B Female 417.8
Sample C Male 386.6
Sample D Male 363.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.