We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SARAF
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SARAF
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:290.5 nTPM
HPA:290.5 nTPM
FANTOM5:354.0 Scaled Tags Per Million
Pig:89.1 nTPM
Mouse:246.6 nTPM
Allen mouse:12.8 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max nTPM 290.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 179.6
2032 Female, age 42, unknown 187.1
2396 Male, age 61, right hemisphere 186.8
2497 Male, age 66, unknown 164.7
Centromedial thalamic nucleus
nTPM: 159.0
2401 Male, age 76, right hemisphere 189.7
2279 Female, age 85, left hemisphere 128.3
Habenula
nTPM: 220.5
1957 Male, age 80, both hemispheres 238.4
2203 Male, age 61, left hemisphere 232.7
2276 Male, age 66, unknown 209.1
2252 Male, age 62, unknown 201.9
Lateral geniculate body
nTPM: 193.2
2575 Female, age 94, right hemisphere 212.0
2106 Female, age 67, right hemisphere 211.3
1953 Male, age 62, unknown 206.8
2035 Female, age 72, unknown 198.7
2399 Male, age 61, left hemisphere 198.7
2857 Male, age 74, right hemisphere 182.2
2841 Male, age 80, both hemispheres 175.4
2659 Male, age 66, unknown 160.2
Lateral thalamic nuclei
nTPM: 198.6
2573 Female, age 94, left hemisphere 227.9
2765 Female, age 67, both hemispheres 211.3
1903 Male, age 76, left hemisphere 200.2
2577 Male, age 74, both hemispheres 191.0
2661 Female, age 72, unknown 162.4
Medial dorsal thalamic nucleus
nTPM: 209.6
2572 Female, age 94, right hemisphere 244.3
2026 Male, age 62, unknown 244.2
2498 Male, age 66, unknown 239.4
2039 Female, age 72, unknown 226.9
2402 Female, age 67, both hemispheres 224.1
1971 Male, age 61, right hemisphere 214.7
1810 Male, age 48, unknown 208.4
2492 Male, age 75, right hemisphere 203.8
2576 Male, age 74, both hemispheres 194.9
1930 Female, age 42, unknown 193.1
1859 Male, age 76, both hemispheres 191.7
2283 Male, age 80, right hemisphere 186.7
2660 Female, age 72, unknown 152.2
Medial geniculate body
nTPM: 192.8
2650 Female, age 94, left hemisphere 223.3
1811 Female, age 42, unknown 216.0
2049 Male, age 76, both hemispheres 198.0
2657 Male, age 74, right hemisphere 182.8
2571 Male, age 75, right hemisphere 177.9
2217 Female, age 72, unknown 176.3
2207 Male, age 80, right hemisphere 175.2
Nucleus reuniens
nTPM: 193.1
2212 Female, age 67, left hemisphere 245.0
2205 Male, age 80, left hemisphere 193.9
2210 Female, age 85, left hemisphere 140.3
Nucleus rhomboideus
nTPM: 174.1
2206 Male, age 80, both hemispheres 214.0
2213 Female, age 67, left hemisphere 183.0
2280 Female, age 85, left hemisphere 125.4
Posterior thalamic nucleus
nTPM: 192.3
2649 Female, age 94, both hemispheres 252.0
2495 Female, age 67, right hemisphere 182.0
2266 Male, age 76, right hemisphere 172.4
2655 Male, age 74, right hemisphere 162.7
Pulvinar
nTPM: 190.8
1972 Male, age 62, unknown 204.8
2398 Male, age 61, left hemisphere 198.3
1929 Male, age 48, unknown 197.6
2582 Female, age 72, unknown 195.6
2499 Male, age 66, unknown 189.8
1932 Male, age 80, right hemisphere 187.9
2724 Male, age 74, right hemisphere 186.7
2214 Male, age 76, right hemisphere 185.6
1899 Female, age 42, unknown 181.7
2496 Female, age 67, right hemisphere 179.5
Subthalamic nucleus
nTPM: 205.0
2406 Female, age 72, unknown 291.9
2275 Male, age 66, unknown 208.2
2779 Female, age 42, unknown 206.3
2124 Male, age 62, unknown 205.1
2282 Male, age 61, both hemispheres 195.4
2658 Male, age 74, both hemispheres 190.6
2056 Female, age 72, unknown 173.3
2216 Male, age 48, unknown 169.2
Ventral posterolateral thalamic nucleus
nTPM: 175.6
2570 Male, age 75, right hemisphere 199.0
2197 Male, age 80, both hemispheres 195.3
2397 Male, age 61, right hemisphere 182.4
2578 Male, age 74, both hemispheres 174.1
2740 Male, age 76, right hemisphere 169.7
2581 Female, age 72, unknown 133.3
Ventral posteromedial thalamic nucleus
nTPM: 187.8
2202 Male, age 61, left hemisphere 207.8
2127 Male, age 76, right hemisphere 186.6
2758 Male, age 80, both hemispheres 185.3
2281 Male, age 75, right hemisphere 182.9
2653 Male, age 74, both hemispheres 176.5
Ventral thalamic nuclei
nTPM: 185.6
1845 Male, age 48, unknown 211.9
1912 Female, age 42, unknown 200.3
1860 Male, age 76, both hemispheres 195.6
2285 Male, age 62, unknown 186.1
2204 Male, age 80, both hemispheres 184.7
2580 Male, age 66, unknown 183.6
2291 Female, age 72, unknown 179.5
2652 Male, age 74, left hemisphere 174.6
2858 Female, age 72, unknown 154.1
Ventromedial nucleus
nTPM: 290.5
1982 Female, age 72, unknown 298.4
1822 Female, age 42, unknown 282.7
Zona incerta
nTPM: 188.9
2403 Male, age 62, unknown 207.3
2215 Male, age 66, unknown 201.5
2208 Male, age 80, right hemisphere 198.3
2822 Male, age 74, right hemisphere 174.0
2663 Female, age 72, unknown 163.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 354.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 354.0
FF:10154-103A1 76 years, female 354.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.1
Pig sample Sample description nTPM
Thalamus
nTPM: 89.1
Samples: 4

Max nTPM: 115.6
Min nTPM: 69.2
Sample A Female 115.6
Sample B Female 69.2
Sample C Male 89.1
Sample D Male 82.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 246.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 246.6
Samples: 4

Max nTPM: 258.9
Min nTPM: 235.8
Sample A Male 235.8
Sample B Male 258.9
Sample C Female 238.5
Sample D Female 253.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 12.8
686217 Antisense, RP_040916_01_C03, Mouse strain C57BL/6J (56 days, male) 14.0
70743884 Antisense, RP_050725_01_H08, Mouse strain C57BL/6J (56 days, male) 11.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.