We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SARAF
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SARAF
BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:218.5 nTPM
HPA:218.5 nTPM
FANTOM5:349.0 Scaled Tags Per Million
Pig:77.3 nTPM
Mouse:388.6 nTPM

WHITE MATTER - Annotated protein expression
Pending normal tissue analysis

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 218.5
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 182.5
1920 Male, age 76, both hemispheres 182.5
Anterior funiculus (white matter)
nTPM: 212.1
2193 Male, age 75, both hemispheres 250.1
2819 Male, age 47, both hemispheres 231.1
2818 Female, age 79, both hemispheres 195.6
2734 Male, age 80, both hemispheres 171.6
Area striata (white matter)
nTPM: 170.9
2258 Female, age 91, left hemisphere 170.9
Cerebellar white matter
nTPM: 194.3
2105 Male, age 74, right hemisphere 218.0
1931 Female, age 91, left hemisphere 204.9
2174 Male, age 61, right hemisphere 201.5
1864 Male, age 80, left hemisphere 193.1
1837 Male, age 76, left hemisphere 181.0
2773 Female, age 85, right hemisphere 167.2
Corpus callosum, genu (white matter)
nTPM: 216.0
1885 Female, age 94, left hemisphere 240.4
1886 Female, age 67, right hemisphere 234.0
2771 Male, age 75, left hemisphere 215.4
1934 Male, age 61, right hemisphere 207.8
1887 Male, age 76, left hemisphere 200.9
1849 Female, age 91, right hemisphere 197.4
Corpus callosum, splenium (white matter)
nTPM: 211.3
2847 Female, age 67, right hemisphere 251.8
2238 Female, age 94, right hemisphere 214.2
2104 Male, age 75, left hemisphere 205.7
1946 Male, age 76, left hemisphere 173.4
Dorsal funiculus (white matter)
nTPM: 217.4
2128 Male, age 75, both hemispheres 246.0
2810 Male, age 90, both hemispheres 231.7
2812 Male, age 66, both hemispheres 216.0
2817 Male, age 47, both hemispheres 206.9
2064 Female, age 79, both hemispheres 186.2
Lateral funiculus (white matter)
nTPM: 218.5
2192 Male, age 75, both hemispheres 240.4
2099 Male, age 90, both hemispheres 234.8
2094 Female, age 79, both hemispheres 209.6
2294 Male, age 66, both hemispheres 189.3
Occipital cortex (white matter)
nTPM: 208.7
2259 Male, age 75, midline 229.0
2257 Female, age 67, both hemispheres 188.3
Parahippocampal cortex (white matter)
nTPM: 194.1
2157 Female, age 91, both hemispheres 194.1
Parieto-temporal junction (white matter)
nTPM: 193.1
1935 Female, age 94, right hemisphere 244.2
1999 Female, age 67, right hemisphere 215.0
2774 Male, age 61, right hemisphere 185.2
2121 Male, age 76, left hemisphere 176.5
2770 Female, age 91, right hemisphere 170.3
2469 Male, age 75, right hemisphere 167.1
Somatomor cortex, precentral gyrus (white matter)
nTPM: 169.9
2439 Male, age 75, right hemisphere 169.9
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 185.6
2623 Male, age 75, right hemisphere 185.6
Temporal white matter
nTPM: 173.1
2736 Female, age 91, right hemisphere 204.5
2523 Female, age 94, left hemisphere 182.0
2254 Male, age 75, right hemisphere 180.7
1801 Male, age 76, left hemisphere 179.7
2524 Female, age 85, left hemisphere 118.7

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 349.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 349.0
FF:10042-101F6 24-68 years, mixed 349.0

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 77.3
Pig sample Sample description nTPM
Corpus callosum
nTPM: 77.3
Samples: 4

Max nTPM: 86.8
Min nTPM: 72.5
Sample A Female 72.5
Sample B Female 86.8
Sample C Male 76.8
Sample D Male 73.1

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 388.6
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 388.6
Samples: 3

Max nTPM: 419.1
Min nTPM: 369.0
Sample A Male 369.0
Sample B Male 377.7
Sample D Female 419.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.