BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.9 nTPM
HPA:48.9 nTPM
GTEx:69.6 nTPM
FANTOM5:70.9 Scaled Tags Per Million
Pig:21.9 nTPM
Mouse:52.6 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051409Antibody CAB031904
Glial cells Not detectedLow
Neuronal cells MediumLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 48.9
1857 Female, age 85, left hemisphere 55.2
2290 Female, age 72, unknown 52.2
1854 Male, age 80, left hemisphere 50.7
1781 Male, age 74, unknown 50.6
2846 Female, age 79, unknown 49.7
2289 Male, age 61, right hemisphere 45.7
2481 Female, age 94, left hemisphere 45.7
2288 Male, age 75, left hemisphere 41.7
Claustrum
nTPM: 45.0
2568 Male, age 61, both hemispheres 48.3
2645 Female, age 72, unknown 47.0
2198 Male, age 80, both hemispheres 46.9
2196 Female, age 79, unknown 45.5
2491 Male, age 75, both hemispheres 45.5
2284 Female, age 91, both hemispheres 45.0
1956 Male, age 74, unknown 44.6
2392 Female, age 94, both hemispheres 42.2
2292 Female, age 85, both hemispheres 39.9
Globus pallidus, externus
nTPM: 38.3
2646 Male, age 61, right hemisphere 39.8
2567 Female, age 72, unknown 39.6
2395 Male, age 75, both hemispheres 38.6
2772 Female, age 79, unknown 37.8
1996 Male, age 80, right hemisphere 35.5
Globus pallidus, internus
nTPM: 35.8
2483 Female, age 94, right hemisphere 40.9
2287 Male, age 75, right hemisphere 38.1
2566 Female, age 72, unknown 35.4
1818 Male, age 74, unknown 35.1
2037 Male, age 80, right hemisphere 34.2
2111 Female, age 85, right hemisphere 33.7
2778 Female, age 91, both hemispheres 33.2
Nucleus accumbens
nTPM: 47.4
1806 Female, age 85, left hemisphere 55.5
1783 Male, age 74, unknown 54.0
1856 Female, age 91, right hemisphere 54.0
2824 Male, age 61, right hemisphere 47.3
2286 Male, age 75, left hemisphere 46.9
2698 Female, age 72, unknown 45.3
2732 Male, age 80, right hemisphere 41.1
2391 Female, age 94, left hemisphere 35.4
Nucleus basalis of Meynert
nTPM: 42.3
2484 Female, age 94, left hemisphere 47.0
2393 Male, age 80, right hemisphere 41.6
2569 Male, age 61, both hemispheres 41.1
2821 Male, age 75, both hemispheres 39.4
Nucleus of the diagonal band
nTPM: 47.0
1812 Female, age 91, both hemispheres 48.6
2775 Male, age 80, right hemisphere 48.4
2029 Male, age 61, right hemisphere 46.8
2195 Female, age 85, both hemispheres 46.6
1979 Male, age 74, unknown 44.9
Olfactory tubercle
nTPM: 48.2
1846 Male, age 80, right hemisphere 50.3
1998 Female, age 91, both hemispheres 49.1
2487 Female, age 94, left hemisphere 49.0
2856 Male, age 75, right hemisphere 44.5
Putamen
nTPM: 46.6
2466 Female, age 79, unknown 51.8
1838 Male, age 80, right hemisphere 50.3
1829 Male, age 74, unknown 46.5
2647 Male, age 75, left hemisphere 45.5
1937 Female, age 91, right hemisphere 45.4
2489 Female, age 72, unknown 44.7
2482 Female, age 94, left hemisphere 41.7
Septal nuclei
nTPM: 44.2
1960 Male, age 74, unknown 51.5
2031 Female, age 72, unknown 48.7
2059 Female, age 85, both hemispheres 45.2
2009 Female, age 91, both hemispheres 44.5
2629 Female, age 94, right hemisphere 44.4
2199 Male, age 80, right hemisphere 37.8
2394 Male, age 61, left hemisphere 37.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 69.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.5
Samples: 246

Max nTPM: 138.7
Min nTPM: 18.1
Std nTPM: 19.0
Median nTPM: 68.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 138.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 125.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 114.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 111.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 111.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 110.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 107.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 106.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 105.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 104.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 102.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 69.6
Samples: 246

Max nTPM: 155.4
Min nTPM: 13.4
Std nTPM: 19.0
Median nTPM: 72.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 155.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 128.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 120.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 112.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 110.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 107.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 107.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 105.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 101.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 99.6
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 96.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 65.4
Samples: 205

Max nTPM: 99.5
Min nTPM: 23.4
Std nTPM: 15.8
Median nTPM: 66.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 99.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 98.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 96.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 96.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 95.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 95.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 94.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 93.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 93.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 92.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 91.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.9
FF:10164-103B2 76 years, female 70.9
Globus pallidus
Scaled Tags Per Million: 36.8
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 17.7
Nucleus accumbens
Scaled Tags Per Million: 51.4
FF:10037-101F1 23-56 years, mixed 51.4
Putamen
Scaled Tags Per Million: 64.7
FF:10176-103C5 60 years, female 64.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.9
Pig sample Sample description nTPM
Caudate
nTPM: 18.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.1
Sample A Female 18.6
Sample B Female 21.5
Sample C Male 19.7
Sample D Male 15.1
Putamen
nTPM: 14.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 12.5
Sample A Female 16.5
Sample B Female 12.5
Sample C Male 12.7
Sample D Male 16.1
Septum
nTPM: 21.9
Samples: 4

Max nTPM: 28.0
Min nTPM: 15.3
Sample A Female 28.0
Sample B Female 22.4
Sample C Male 21.7
Sample D Male 15.3
Ventral pallidum
nTPM: 18.3
Samples: 4

Max nTPM: 20.3
Min nTPM: 16.0
Sample A Female 20.3
Sample B Female 18.7
Sample C Male 16.0
Sample D Male 18.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 52.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.2
Samples: 4

Max nTPM: 36.5
Min nTPM: 26.6
Sample A Male 26.6
Sample B Male 28.6
Sample C Female 36.5
Sample D Female 33.0
Septum
nTPM: 52.6
Samples: 4

Max nTPM: 63.7
Min nTPM: 44.9
Sample A Male 63.7
Sample B Male 48.2
Sample C Female 53.4
Sample D Female 44.9
Ventral forebrain
nTPM: 52.1
Samples: 4

Max nTPM: 53.8
Min nTPM: 48.1
Sample A Male 53.7
Sample B Male 48.1
Sample C Female 52.7
Sample D Female 53.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
70445646 Antisense, RP_050614_04_C07, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.7
70445646 Antisense, RP_050614_04_C07, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.