MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.2 nTPM
HPA:79.2 nTPM
GTEx:83.6 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:54.5 nTPM
Mouse:43.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
2411 Female, age 72, unknown 81.3
1870 Female, age 42, unknown 80.1
1833 Male, age 53, unknown 75.2
1827 Male, age 72, unknown 74.0
1830 Male, age 51, unknown 73.5
2019 Male, age 18, unknown 73.0
2666 Male, age 74, left hemisphere 72.2
2219 Male, age 76, both hemispheres 71.1
2828 Female, age 72, unknown 70.8
2586 Male, age 75, left hemisphere 70.4
Dorsal raphe nucleus
nTPM: 77.8
2298 Female, age 72, unknown 81.6
1828 Male, age 53, unknown 78.2
2750 Male, age 76, both hemispheres 77.6
2047 Male, age 72, unknown 77.3
2016 Female, age 72, unknown 74.3
Inferior colliculus
nTPM: 75.1
2097 Female, age 72, unknown 79.5
1848 Female, age 42, unknown 74.6
1890 Male, age 53, unknown 74.6
2849 Male, age 72, unknown 71.6
Median raphe nucleus
nTPM: 77.9
2220 Male, age 76, midline 77.9
Pedunculopontine tegmental nucleus
nTPM: 77.3
1921 Female, age 85, both hemispheres 79.3
2334 Male, age 80, both hemispheres 78.0
2338 Male, age 61, both hemispheres 74.5
Periaquaductal grey, anterior
nTPM: 74.8
1947 Male, age 18, unknown 76.9
2502 Female, age 75, unknown 74.4
1795 Male, age 51, unknown 73.1
Periaquaductal grey, dorsal
nTPM: 74.9
1840 Male, age 53, unknown 76.0
2464 Female, age 72, unknown 75.2
2850 Male, age 76, both hemispheres 75.1
1831 Male, age 72, unknown 73.1
Periaquaductal grey, lateral
nTPM: 72.8
2053 Male, age 18, unknown 74.0
2140 Male, age 76, both hemispheres 72.3
2272 Male, age 74, both hemispheres 72.0
Pretectal area
nTPM: 75.6
2667 Female, age 75, unknown 80.1
2224 Female, age 72, unknown 79.2
1817 Female, age 42, unknown 77.4
1944 Female, age 72, unknown 76.5
1816 Male, age 51, unknown 76.2
1815 Male, age 53, unknown 75.4
2825 Male, age 18, unknown 75.4
2007 Male, age 72, unknown 75.0
2273 Male, age 74, both hemispheres 74.0
2316 Male, age 76, right hemisphere 73.7
2407 Male, age 75, both hemispheres 68.1
Red nucleus
nTPM: 74.9
1821 Female, age 72, unknown 84.4
1904 Male, age 53, unknown 77.4
1954 Female, age 42, unknown 76.9
2823 Male, age 76, right hemisphere 76.1
1865 Male, age 51, unknown 75.8
2503 Female, age 72, unknown 75.4
2725 Female, age 75, unknown 74.8
2769 Male, age 72, unknown 73.7
2227 Male, age 72, unknown 73.3
2588 Male, age 74, left hemisphere 72.8
2785 Male, age 18, unknown 70.3
2584 Male, age 75, left hemisphere 68.0
Substantia nigra
nTPM: 78.6
2241 Male, age 72, unknown 88.4
1916 Female, age 42, unknown 84.5
1851 Male, age 51, unknown 81.8
2409 Female, age 72, unknown 80.8
1889 Female, age 72, unknown 79.9
2699 Male, age 18, unknown 78.7
1941 Male, age 53, unknown 76.2
2590 Female, age 75, unknown 73.3
2665 Male, age 74, both hemispheres 72.2
2583 Male, age 75, right hemisphere 69.8
Superior colliculus
nTPM: 73.4
1895 Male, age 76, right hemisphere 76.6
2587 Male, age 74, left hemisphere 75.5
2261 Male, age 18, unknown 74.9
1995 Male, age 72, unknown 73.7
2668 Female, age 75, unknown 73.7
1913 Female, age 42, unknown 73.4
1796 Male, age 53, unknown 73.2
2087 Female, age 72, unknown 73.2
1839 Male, age 51, unknown 72.4
2664 Male, age 75, both hemispheres 67.8
Ventral tegmental area
nTPM: 79.2
2410 Female, age 72, unknown 84.9
1915 Female, age 42, unknown 82.1
2218 Male, age 76, both hemispheres 79.9
2223 Female, age 72, unknown 76.7
1942 Male, age 51, unknown 76.5
2021 Male, age 53, unknown 75.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.6
Samples: 139

Max nTPM: 135.5
Min nTPM: 46.8
Std nTPM: 17.0
Median nTPM: 80.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 135.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 122.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 120.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 119.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 118.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 117.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 114.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 114.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 113.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 110.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 108.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.6
FF:10158-103A5 76 years, female 100.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.5
Pig sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 66.9
Min nTPM: 43.2
Sample A Female 43.2
Sample B Female 47.8
Sample C Male 66.9
Sample D Male 60.1
Periaqueductal gray
nTPM: 42.8
Samples: 3

Max nTPM: 45.2
Min nTPM: 40.3
Sample B Female 42.8
Sample C Male 45.2
Sample D Male 40.3
Substantia nigra
nTPM: 50.4
Samples: 4

Max nTPM: 62.9
Min nTPM: 36.0
Sample A Female 62.9
Sample B Female 43.9
Sample C Male 58.6
Sample D Male 36.0
Superior colliculi
nTPM: 53.7
Samples: 4

Max nTPM: 64.3
Min nTPM: 40.0
Sample A Female 57.1
Sample B Female 40.0
Sample C Male 64.3
Sample D Male 53.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 45.6
Min nTPM: 41.4
Sample A Male 41.4
Sample B Male 44.7
Sample C Female 45.6
Sample D Female 44.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71493129 Antisense, RP_050913_02_C01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.