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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:60.3 nTPM
HPA:60.3 nTPM
GTEx:88.4 nTPM
FANTOM5:117.4 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 60.3
Sample id Sample description nTPM
Amygdala
nTPM: 59.0
2514 Male, age 75, right hemisphere 64.8
1987 Female, age 91, left hemisphere 62.4
2517 Female, age 94, left hemisphere 58.1
2695 Female, age 67, right hemisphere 56.0
2814 Male, age 76, right hemisphere 53.6
Basal amygdala
nTPM: 60.3
2609 Male, age 75, right hemisphere 65.0
2110 Male, age 80, left hemisphere 64.0
2243 Female, age 91, right hemisphere 62.7
2685 Female, age 94, left hemisphere 58.5
1955 Male, age 76, both hemispheres 57.6
2827 Female, age 67, right hemisphere 54.3
Central amygdala
nTPM: 58.0
2239 Male, age 80, left hemisphere 62.6
2515 Male, age 75, right hemisphere 59.6
2701 Female, age 91, right hemisphere 58.8
2826 Female, age 94, left hemisphere 55.3
1905 Male, age 76, both hemispheres 53.7
Corticomedial amygdala
nTPM: 59.8
2829 Male, age 80, left hemisphere 63.2
2428 Male, age 75, right hemisphere 61.0
2242 Female, age 91, right hemisphere 60.7
2240 Male, age 76, both hemispheres 59.1
2429 Female, age 94, left hemisphere 58.5
2535 Female, age 67, right hemisphere 56.5
Lateral amygdala
nTPM: 59.6
2256 Male, age 80, left hemisphere 69.0
2516 Male, age 75, right hemisphere 65.3
2255 Female, age 91, right hemisphere 61.0
2534 Female, age 94, left hemisphere 54.9
1883 Male, age 76, both hemispheres 54.4
2830 Female, age 67, right hemisphere 53.1
Stria terminalis, bed nucleus
nTPM: 56.3
1974 Female, age 91, both hemispheres 57.3
2486 Female, age 94, both hemispheres 55.8
2201 Male, age 74, unknown 55.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 88.4
Samples: 152

Max nTPM: 426.7
Min nTPM: 2.7
Std nTPM: 65.3
Median nTPM: 74.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 426.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 271.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 260.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 253.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 244.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 240.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 239.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 232.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 208.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 195.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 188.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 188.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 183.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 181.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 179.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 176.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 174.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 170.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 166.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 165.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 159.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 158.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 157.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 148.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 148.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 141.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 136.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 135.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 134.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 132.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 128.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 127.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 118.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 118.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 116.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 115.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 115.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 114.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 107.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 107.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 105.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 103.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 99.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 98.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 98.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 97.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 94.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 94.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 93.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 92.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 91.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 88.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 87.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 85.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 83.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 83.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 82.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 82.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 80.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 80.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 79.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 78.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 78.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 77.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 77.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 76.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 74.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 74.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 74.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 73.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 70.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 69.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 69.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 67.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 66.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 66.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 64.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 63.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 63.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 63.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 62.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 61.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 61.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 60.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 59.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 57.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 57.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 54.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 54.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 53.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 51.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 51.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 50.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 49.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 48.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 48.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 47.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 46.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 46.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 43.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 40.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 40.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 40.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 39.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 37.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 37.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 35.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 33.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 33.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 31.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 27.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 26.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 25.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 24.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 23.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 23.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 22.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 20.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 18.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 18.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 17.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 17.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 16.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 15.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 15.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 14.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 14.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 13.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 12.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 10.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 10.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 8.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 6.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 6.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 117.4
FF:10151-102I7 76 years, female 117.4

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