BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:65.3 nTPM
HPA:65.3 nTPM
GTEx:86.6 nTPM
FANTOM5:105.6 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA055972Antibody HPA055973
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 65.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 65.3
2288 Male, age 75, left hemisphere 72.9
2481 Female, age 94, left hemisphere 70.8
2289 Male, age 61, right hemisphere 70.3
2290 Female, age 72, unknown 69.3
1854 Male, age 80, left hemisphere 66.2
1781 Male, age 74, unknown 59.0
1857 Female, age 85, left hemisphere 58.6
2846 Female, age 79, unknown 55.5
Claustrum
nTPM: 55.4
2196 Female, age 79, unknown 59.3
2491 Male, age 75, both hemispheres 57.7
2198 Male, age 80, both hemispheres 57.3
2645 Female, age 72, unknown 55.1
1956 Male, age 74, unknown 55.0
2392 Female, age 94, both hemispheres 55.0
2284 Female, age 91, both hemispheres 54.1
2568 Male, age 61, both hemispheres 53.5
2292 Female, age 85, both hemispheres 51.4
Globus pallidus, externus
nTPM: 53.4
1996 Male, age 80, right hemisphere 55.2
2646 Male, age 61, right hemisphere 55.1
2395 Male, age 75, both hemispheres 52.6
2772 Female, age 79, unknown 52.3
2567 Female, age 72, unknown 51.8
Globus pallidus, internus
nTPM: 52.7
2483 Female, age 94, right hemisphere 55.6
2111 Female, age 85, right hemisphere 52.6
2037 Male, age 80, right hemisphere 52.5
2778 Female, age 91, both hemispheres 52.4
1818 Male, age 74, unknown 52.3
2287 Male, age 75, right hemisphere 52.3
2566 Female, age 72, unknown 51.4
Nucleus accumbens
nTPM: 59.6
2286 Male, age 75, left hemisphere 68.7
2698 Female, age 72, unknown 61.2
1783 Male, age 74, unknown 59.4
1856 Female, age 91, right hemisphere 58.6
2732 Male, age 80, right hemisphere 57.8
1806 Female, age 85, left hemisphere 57.7
2824 Male, age 61, right hemisphere 57.4
2391 Female, age 94, left hemisphere 56.2
Nucleus basalis of Meynert
nTPM: 56.2
2393 Male, age 80, right hemisphere 58.1
2569 Male, age 61, both hemispheres 56.4
2821 Male, age 75, both hemispheres 55.3
2484 Female, age 94, left hemisphere 54.9
Nucleus of the diagonal band
nTPM: 58.5
2775 Male, age 80, right hemisphere 60.5
1812 Female, age 91, both hemispheres 59.6
1979 Male, age 74, unknown 59.1
2195 Female, age 85, both hemispheres 57.4
2029 Male, age 61, right hemisphere 55.9
Olfactory tubercle
nTPM: 59.4
1846 Male, age 80, right hemisphere 66.6
2856 Male, age 75, right hemisphere 58.7
2487 Female, age 94, left hemisphere 56.2
1998 Female, age 91, both hemispheres 55.9
Putamen
nTPM: 56.3
1838 Male, age 80, right hemisphere 58.1
1937 Female, age 91, right hemisphere 58.0
2489 Female, age 72, unknown 57.5
2482 Female, age 94, left hemisphere 56.4
2647 Male, age 75, left hemisphere 55.7
2466 Female, age 79, unknown 54.4
1829 Male, age 74, unknown 54.2
Septal nuclei
nTPM: 59.5
2199 Male, age 80, right hemisphere 62.4
2629 Female, age 94, right hemisphere 61.5
2059 Female, age 85, both hemispheres 61.1
2009 Female, age 91, both hemispheres 59.7
1960 Male, age 74, unknown 58.9
2031 Female, age 72, unknown 58.1
2394 Male, age 61, left hemisphere 54.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 86.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.6
Samples: 246

Max nTPM: 487.8
Min nTPM: 7.0
Std nTPM: 60.5
Median nTPM: 70.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 487.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 400.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 286.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 252.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 249.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 242.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 241.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 228.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 228.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 215.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 199.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 69.2
Samples: 246

Max nTPM: 294.6
Min nTPM: 4.6
Std nTPM: 48.8
Median nTPM: 58.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 294.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 290.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 237.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 232.8
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 227.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 215.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 212.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 211.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 201.3
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 189.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 186.3
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Brain - Putamen (basal ganglia)
Average nTPM: 59.3
Samples: 205

Max nTPM: 275.0
Min nTPM: 1.9
Std nTPM: 45.6
Median nTPM: 49.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 275.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 242.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 230.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 190.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 179.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 172.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 170.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 168.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 162.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 158.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 152.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.6
FF:10164-103B2 76 years, female 105.6
Globus pallidus
Scaled Tags Per Million: 28.7
FF:10161-103A8 76 years, female 29.8
FF:10175-103C4 60 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 66.1
FF:10037-101F1 23-56 years, mixed 66.1
Putamen
Scaled Tags Per Million: 50.0
FF:10176-103C5 60 years, female 50.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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