BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.1 nTPM
HPA:15.1 nTPM
GTEx:9.1 nTPM
FANTOM5:78.9 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:69.4 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.9
2481 Female, age 94, left hemisphere 17.1
2288 Male, age 75, left hemisphere 15.3
2290 Female, age 72, unknown 15.2
2846 Female, age 79, unknown 15.1
1857 Female, age 85, left hemisphere 14.5
1854 Male, age 80, left hemisphere 14.2
1781 Male, age 74, unknown 14.1
2289 Male, age 61, right hemisphere 13.3
Claustrum
nTPM: 13.3
1956 Male, age 74, unknown 14.6
2196 Female, age 79, unknown 14.0
2198 Male, age 80, both hemispheres 13.9
2392 Female, age 94, both hemispheres 13.7
2292 Female, age 85, both hemispheres 13.2
2491 Male, age 75, both hemispheres 13.2
2284 Female, age 91, both hemispheres 12.6
2645 Female, age 72, unknown 12.5
2568 Male, age 61, both hemispheres 12.2
Globus pallidus, externus
nTPM: 14.3
2772 Female, age 79, unknown 16.5
1996 Male, age 80, right hemisphere 15.7
2395 Male, age 75, both hemispheres 14.7
2646 Male, age 61, right hemisphere 12.6
2567 Female, age 72, unknown 12.1
Globus pallidus, internus
nTPM: 15.1
2778 Female, age 91, both hemispheres 17.0
2287 Male, age 75, right hemisphere 16.5
1818 Male, age 74, unknown 15.3
2037 Male, age 80, right hemisphere 15.1
2111 Female, age 85, right hemisphere 14.9
2483 Female, age 94, right hemisphere 14.6
2566 Female, age 72, unknown 12.4
Nucleus accumbens
nTPM: 14.7
2286 Male, age 75, left hemisphere 16.4
1806 Female, age 85, left hemisphere 15.3
2391 Female, age 94, left hemisphere 15.0
1856 Female, age 91, right hemisphere 14.6
2698 Female, age 72, unknown 14.5
2732 Male, age 80, right hemisphere 14.0
2824 Male, age 61, right hemisphere 14.0
1783 Male, age 74, unknown 13.7
Nucleus basalis of Meynert
nTPM: 13.5
2393 Male, age 80, right hemisphere 14.1
2821 Male, age 75, both hemispheres 13.6
2484 Female, age 94, left hemisphere 13.5
2569 Male, age 61, both hemispheres 12.8
Nucleus of the diagonal band
nTPM: 14.3
1812 Female, age 91, both hemispheres 15.2
2775 Male, age 80, right hemisphere 14.6
1979 Male, age 74, unknown 14.4
2029 Male, age 61, right hemisphere 13.9
2195 Female, age 85, both hemispheres 13.4
Olfactory tubercle
nTPM: 13.6
1846 Male, age 80, right hemisphere 13.8
2487 Female, age 94, left hemisphere 13.8
2856 Male, age 75, right hemisphere 13.8
1998 Female, age 91, both hemispheres 13.0
Putamen
nTPM: 14.0
2482 Female, age 94, left hemisphere 16.0
2466 Female, age 79, unknown 15.4
1829 Male, age 74, unknown 14.2
1937 Female, age 91, right hemisphere 14.1
1838 Male, age 80, right hemisphere 13.7
2489 Female, age 72, unknown 12.5
2647 Male, age 75, left hemisphere 12.0
Septal nuclei
nTPM: 13.9
2031 Female, age 72, unknown 15.2
1960 Male, age 74, unknown 14.0
2009 Female, age 91, both hemispheres 13.7
2629 Female, age 94, right hemisphere 13.7
2059 Female, age 85, both hemispheres 13.5
2199 Male, age 80, right hemisphere 13.5
2394 Male, age 61, left hemisphere 13.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.1
Samples: 246

Max nTPM: 22.0
Min nTPM: 3.3
Std nTPM: 2.5
Median nTPM: 8.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 16.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 16.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 15.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 15.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 15.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 14.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 14.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 14.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 14.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 13.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.5
Samples: 246

Max nTPM: 20.4
Min nTPM: 0.0
Std nTPM: 2.8
Median nTPM: 8.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 20.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 16.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 16.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 15.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 15.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 14.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 14.7
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 13.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 13.5
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 12.9
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 12.8
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Brain - Putamen (basal ganglia)
Average nTPM: 8.3
Samples: 205

Max nTPM: 17.8
Min nTPM: 0.0
Std nTPM: 2.7
Median nTPM: 8.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 17.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 15.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 15.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 14.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 13.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 13.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 13.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 13.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 13.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 12.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 12.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.1
FF:10164-103B2 76 years, female 62.1
Globus pallidus
Scaled Tags Per Million: 78.9
FF:10175-103C4 60 years, female 92.3
FF:10161-103A8 76 years, female 65.5
Nucleus accumbens
Scaled Tags Per Million: 70.7
FF:10037-101F1 23-56 years, mixed 70.7
Putamen
Scaled Tags Per Million: 64.1
FF:10176-103C5 60 years, female 64.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 25.8
Pig sample Sample description nTPM
Caudate
nTPM: 19.5
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.6
Sample A Female 19.6
Sample B Female 19.1
Sample C Male 20.8
Sample D Male 18.6
Putamen
nTPM: 25.8
Samples: 4

Max nTPM: 35.4
Min nTPM: 20.1
Sample A Female 25.7
Sample B Female 20.1
Sample C Male 35.4
Sample D Male 22.0
Septum
nTPM: 23.2
Samples: 4

Max nTPM: 26.8
Min nTPM: 19.5
Sample A Female 25.3
Sample B Female 21.3
Sample C Male 26.8
Sample D Male 19.5
Ventral pallidum
nTPM: 21.2
Samples: 4

Max nTPM: 22.8
Min nTPM: 19.9
Sample A Female 19.9
Sample B Female 22.8
Sample C Male 21.8
Sample D Male 20.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 69.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.2
Samples: 4

Max nTPM: 56.9
Min nTPM: 50.8
Sample A Male 56.9
Sample B Male 50.8
Sample C Female 56.6
Sample D Female 52.3
Septum
nTPM: 69.4
Samples: 4

Max nTPM: 74.7
Min nTPM: 63.1
Sample A Male 63.1
Sample B Male 66.2
Sample C Female 73.4
Sample D Female 74.7
Ventral forebrain
nTPM: 55.3
Samples: 4

Max nTPM: 61.1
Min nTPM: 49.9
Sample A Male 49.9
Sample B Male 58.0
Sample C Female 61.1
Sample D Female 52.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68158073 Antisense, RP_041116_02_G02, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.5
68158073 Antisense, RP_041116_02_G02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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