MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA:20.3 nTPM
GTEx:18.1 nTPM
FANTOM5:109.2 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:61.4 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
2586 Male, age 75, left hemisphere 23.0
1827 Male, age 72, unknown 21.4
2666 Male, age 74, left hemisphere 21.4
2828 Female, age 72, unknown 20.5
2411 Female, age 72, unknown 19.6
1870 Female, age 42, unknown 19.4
2019 Male, age 18, unknown 18.5
1833 Male, age 53, unknown 18.3
1830 Male, age 51, unknown 15.4
2219 Male, age 76, both hemispheres 15.2
Dorsal raphe nucleus
nTPM: 18.0
2016 Female, age 72, unknown 18.7
2750 Male, age 76, both hemispheres 18.7
1828 Male, age 53, unknown 18.6
2047 Male, age 72, unknown 17.0
2298 Female, age 72, unknown 16.9
Inferior colliculus
nTPM: 19.5
1890 Male, age 53, unknown 20.4
1848 Female, age 42, unknown 19.6
2849 Male, age 72, unknown 19.2
2097 Female, age 72, unknown 18.7
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Pedunculopontine tegmental nucleus
nTPM: 16.3
1921 Female, age 85, both hemispheres 19.8
2334 Male, age 80, both hemispheres 18.7
2338 Male, age 61, both hemispheres 10.3
Periaquaductal grey, anterior
nTPM: 17.3
1795 Male, age 51, unknown 17.9
1947 Male, age 18, unknown 17.9
2502 Female, age 75, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 17.9
2464 Female, age 72, unknown 19.5
1840 Male, age 53, unknown 18.0
1831 Male, age 72, unknown 17.9
2850 Male, age 76, both hemispheres 16.2
Periaquaductal grey, lateral
nTPM: 16.1
2053 Male, age 18, unknown 19.7
2140 Male, age 76, both hemispheres 14.9
2272 Male, age 74, both hemispheres 13.7
Pretectal area
nTPM: 20.3
1817 Female, age 42, unknown 25.5
1944 Female, age 72, unknown 24.2
1816 Male, age 51, unknown 23.8
1815 Male, age 53, unknown 22.8
2007 Male, age 72, unknown 22.1
2667 Female, age 75, unknown 20.9
2825 Male, age 18, unknown 19.3
2224 Female, age 72, unknown 18.6
2407 Male, age 75, both hemispheres 16.3
2316 Male, age 76, right hemisphere 15.2
2273 Male, age 74, both hemispheres 14.5
Red nucleus
nTPM: 19.1
2503 Female, age 72, unknown 22.5
1821 Female, age 72, unknown 21.3
2584 Male, age 75, left hemisphere 21.2
2588 Male, age 74, left hemisphere 19.9
2725 Female, age 75, unknown 19.7
2823 Male, age 76, right hemisphere 18.8
2769 Male, age 72, unknown 18.6
1954 Female, age 42, unknown 18.1
2227 Male, age 72, unknown 17.8
2785 Male, age 18, unknown 17.6
1865 Male, age 51, unknown 17.3
1904 Male, age 53, unknown 15.8
Substantia nigra
nTPM: 18.7
1889 Female, age 72, unknown 22.3
2583 Male, age 75, right hemisphere 20.9
2665 Male, age 74, both hemispheres 20.1
1941 Male, age 53, unknown 19.6
2241 Male, age 72, unknown 18.9
1916 Female, age 42, unknown 18.8
1851 Male, age 51, unknown 18.1
2590 Female, age 75, unknown 16.9
2699 Male, age 18, unknown 16.5
2409 Female, age 72, unknown 14.4
Superior colliculus
nTPM: 19.6
2087 Female, age 72, unknown 22.4
1796 Male, age 53, unknown 21.3
2668 Female, age 75, unknown 21.3
2261 Male, age 18, unknown 19.8
1839 Male, age 51, unknown 19.4
1913 Female, age 42, unknown 19.3
2587 Male, age 74, left hemisphere 18.2
1895 Male, age 76, right hemisphere 18.1
1995 Male, age 72, unknown 18.0
2664 Male, age 75, both hemispheres 17.8
Ventral tegmental area
nTPM: 17.7
1942 Male, age 51, unknown 19.9
2223 Female, age 72, unknown 19.3
2410 Female, age 72, unknown 18.5
1915 Female, age 42, unknown 17.3
2218 Male, age 76, both hemispheres 16.3
2021 Male, age 53, unknown 15.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 139

Max nTPM: 36.8
Min nTPM: 8.7
Std nTPM: 4.2
Median nTPM: 17.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 36.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 31.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 30.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 28.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 25.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 25.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 23.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 23.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 23.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 23.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.2
FF:10158-103A5 76 years, female 109.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.3
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 26.8
Min nTPM: 15.4
Sample A Female 26.8
Sample B Female 15.4
Sample C Male 24.0
Sample D Male 22.9
Periaqueductal gray
nTPM: 16.4
Samples: 3

Max nTPM: 17.1
Min nTPM: 15.1
Sample B Female 17.1
Sample C Male 17.1
Sample D Male 15.1
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.1
Sample A Female 20.4
Sample B Female 16.1
Sample C Male 19.9
Sample D Male 17.5
Superior colliculi
nTPM: 18.9
Samples: 4

Max nTPM: 22.6
Min nTPM: 11.5
Sample A Female 21.3
Sample B Female 11.5
Sample C Male 22.6
Sample D Male 20.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.4
Samples: 4

Max nTPM: 68.3
Min nTPM: 54.2
Sample A Male 54.2
Sample B Male 60.2
Sample C Female 68.3
Sample D Female 62.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
73573199 Antisense, RP_051121_03_E02, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.