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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:78.0 nTPM
GTEx:78.0 nTPM
FANTOM5:129.7 Scaled Tags Per Million
Pig:37.4 nTPM
Mouse:79.1 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 78.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 78.0
Samples: 105

Max nTPM: 101.8
Min nTPM: 54.8
Std nTPM: 8.4
Median nTPM:
6_1 73 years, female 101.8
177_1 74 years, male 100.2
322_1 76 years, male 97.1
2_1 77 years, female 96.3
163_1 78 years, male 94.8
288_1 66 years, female 93.2
386_1 76 years, male 92.0
293_1 68 years, female 89.9
377_1 82 years, female 89.8
321_1 62 years, female 88.6
501_1 88 years, male 88.2
243_1 75 years, male 87.9
518_1 75 years, female 87.9
526_1 61 years, male 86.7
480_1 63 years, male 86.5
172_1 72 years, female 86.2
452_1 88 years, female 86.0
139_1 64 years, female 85.6
406_1 79 years, male 85.3
237_1 82 years, male 84.6
316_1 62 years, male 84.6
320_1 89 years, female 84.6
348_1 84 years, male 84.4
425_1 59 years, female 84.4
17_1 71 years, male 84.2
18_1 88 years, male 83.9
35_1 74 years, female 83.5
319_1 81 years, male 83.4
229_1 69 years, female 81.9
145_1 84 years, male 81.7
313_1 79 years, female 81.6
308_1 70 years, female 81.3
415_1 77 years, female 81.1
189_1 76 years, male 81.0
375_1 74 years, female 80.9
376_1 75 years, female 80.9
137_1 83 years, male 80.6
246_1 77 years, male 80.5
291_1 76 years, male 80.4
404_1 82 years, female 79.9
495_1 57 years, female 79.9
173_1 67 years, male 79.6
265_1 87 years, male 79.6
318_1 68 years, male 79.5
115_1 83 years, male 79.4
251_1 78 years, male 79.0
292_1 71 years, male 78.9
414_1 84 years, female 78.8
352_1 62 years, male 78.3
142_1 61 years, female 78.2
335_1 73 years, female 78.1
506_1 65 years, male 78.1
447_1 81 years, male 77.8
351_1 91 years, male 77.7
119_1 70 years, female 77.3
81_1 67 years, male 77.2
254_1 77 years, female 77.2
153_1 70 years, female 76.8
314_1 67 years, male 76.4
317_1 60 years, male 76.2
41_1 94 years, female 76.0
413_1 59 years, female 76.0
349_1 83 years, male 75.9
353_1 82 years, female 75.6
384_1 83 years, male 75.6
9_1 66 years, female 75.3
311_1 78 years, male 74.9
109_1 81 years, female 74.8
347_1 72 years, male 74.8
32_1 67 years, male 74.7
286_1 68 years, female 74.6
264_1 73 years, female 74.4
324_1 76 years, male 74.0
350_1 84 years, female 74.0
405_1 91 years, male 73.8
396_1 62 years, male 73.5
4_1 88 years, female 73.2
307_1 66 years, female 73.2
315_1 62 years, female 72.9
126_1 63 years, male 72.7
43_1 64 years, female 72.6
379_1 60 years, male 72.5
295_1 61 years, female 71.3
468_1 89 years, male 70.7
266_1 85 years, male 70.3
117_1 61 years, male 69.8
120_1 70 years, female 69.8
503_1 68 years, male 69.8
217_1 76 years, male 69.7
499_1 55 years, female 69.4
389_1 86 years, female 69.1
99_1 64 years, male 68.7
355_1 70 years, female 68.4
466_1 57 years, female 67.8
149_1 88 years, male 67.6
490_1 67 years, female 67.3
89_1 63 years, male 66.8
394_1 75 years, female 66.0
42_1 85 years, male 65.6
354_1 81 years, female 65.0
162_1 79 years, female 64.7
517_1 88 years, male 64.7
218_1 71 years, female 63.8
356_1 87 years, female 60.2
491_1 89 years, female 54.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 129.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 129.7
FF:10030-101E3 24-65 years, mixed 129.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.4
Pig sample Sample description nTPM
Retina
nTPM: 37.4
Samples: 4

Max nTPM: 40.9
Min nTPM: 36.1
Sample A Female 36.2
Sample B Female 36.1
Sample C Male 40.9
Sample D Male 36.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.1
Mouse sample Sample description nTPM
Retina
nTPM: 79.1
Samples: 4

Max nTPM: 82.0
Min nTPM: 74.3
Sample A Male 82.0
Sample B Male 79.2
Sample C Female 74.3
Sample D Female 80.7

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by the Knut & Alice Wallenberg Foundation.