MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA:27.8 nTPM
GTEx:32.9 nTPM
FANTOM5:57.6 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:16.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
2411 Female, age 72, unknown 28.9
1870 Female, age 42, unknown 28.7
1833 Male, age 53, unknown 27.8
2219 Male, age 76, both hemispheres 27.8
1830 Male, age 51, unknown 27.3
1827 Male, age 72, unknown 26.8
2019 Male, age 18, unknown 26.7
2586 Male, age 75, left hemisphere 26.2
2828 Female, age 72, unknown 25.5
2666 Male, age 74, left hemisphere 23.8
Dorsal raphe nucleus
nTPM: 26.1
2750 Male, age 76, both hemispheres 27.3
2298 Female, age 72, unknown 26.5
2047 Male, age 72, unknown 26.2
1828 Male, age 53, unknown 25.9
2016 Female, age 72, unknown 24.7
Inferior colliculus
nTPM: 27.8
2849 Male, age 72, unknown 28.4
1848 Female, age 42, unknown 28.3
1890 Male, age 53, unknown 27.2
2097 Female, age 72, unknown 27.2
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Pedunculopontine tegmental nucleus
nTPM: 26.6
1921 Female, age 85, both hemispheres 27.2
2334 Male, age 80, both hemispheres 26.9
2338 Male, age 61, both hemispheres 25.6
Periaquaductal grey, anterior
nTPM: 25.3
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 25.0
1947 Male, age 18, unknown 24.9
Periaquaductal grey, dorsal
nTPM: 26.3
2850 Male, age 76, both hemispheres 27.0
2464 Female, age 72, unknown 26.6
1840 Male, age 53, unknown 26.1
1831 Male, age 72, unknown 25.4
Periaquaductal grey, lateral
nTPM: 26.6
2272 Male, age 74, both hemispheres 28.1
2053 Male, age 18, unknown 26.2
2140 Male, age 76, both hemispheres 25.6
Pretectal area
nTPM: 26.1
2316 Male, age 76, right hemisphere 27.0
2407 Male, age 75, both hemispheres 26.8
2667 Female, age 75, unknown 26.8
2273 Male, age 74, both hemispheres 26.6
2825 Male, age 18, unknown 26.6
1817 Female, age 42, unknown 26.0
2007 Male, age 72, unknown 25.9
2224 Female, age 72, unknown 25.9
1944 Female, age 72, unknown 25.2
1816 Male, age 51, unknown 24.9
1815 Male, age 53, unknown 24.8
Red nucleus
nTPM: 26.6
2503 Female, age 72, unknown 28.0
2588 Male, age 74, left hemisphere 27.5
2769 Male, age 72, unknown 27.3
1954 Female, age 42, unknown 27.2
2227 Male, age 72, unknown 27.0
1904 Male, age 53, unknown 26.6
2785 Male, age 18, unknown 26.4
2725 Female, age 75, unknown 26.1
1821 Female, age 72, unknown 25.9
1865 Male, age 51, unknown 25.8
2823 Male, age 76, right hemisphere 25.7
2584 Male, age 75, left hemisphere 25.4
Substantia nigra
nTPM: 25.3
1941 Male, age 53, unknown 26.4
2583 Male, age 75, right hemisphere 26.3
1851 Male, age 51, unknown 26.2
2590 Female, age 75, unknown 26.0
1889 Female, age 72, unknown 25.8
2241 Male, age 72, unknown 25.7
2699 Male, age 18, unknown 25.6
1916 Female, age 42, unknown 24.5
2665 Male, age 74, both hemispheres 23.7
2409 Female, age 72, unknown 23.2
Superior colliculus
nTPM: 26.1
1895 Male, age 76, right hemisphere 28.0
1839 Male, age 51, unknown 27.6
1796 Male, age 53, unknown 26.6
2261 Male, age 18, unknown 26.3
2587 Male, age 74, left hemisphere 26.3
1913 Female, age 42, unknown 26.1
2664 Male, age 75, both hemispheres 26.0
1995 Male, age 72, unknown 24.9
2087 Female, age 72, unknown 24.9
2668 Female, age 75, unknown 24.4
Ventral tegmental area
nTPM: 25.9
2223 Female, age 72, unknown 27.3
2218 Male, age 76, both hemispheres 26.1
2410 Female, age 72, unknown 26.1
1942 Male, age 51, unknown 25.5
2021 Male, age 53, unknown 25.4
1915 Female, age 42, unknown 25.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 139

Max nTPM: 55.3
Min nTPM: 17.3
Std nTPM: 6.4
Median nTPM: 32.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 50.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 49.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 47.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 44.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 44.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 43.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 43.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 42.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.7
Pig sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 6.2
Sample A Female 16.0
Sample B Female 8.7
Sample C Male 7.7
Sample D Male 6.2
Periaqueductal gray
nTPM: 6.9
Samples: 3

Max nTPM: 9.0
Min nTPM: 5.8
Sample B Female 9.0
Sample C Male 5.8
Sample D Male 5.8
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 10.8
Min nTPM: 7.2
Sample A Female 10.8
Sample B Female 8.5
Sample C Male 7.2
Sample D Male 8.7
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.4
Sample A Female 10.6
Sample B Female 8.6
Sample C Male 9.2
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 15.0
Sample A Male 16.2
Sample B Male 16.8
Sample C Female 15.0
Sample D Female 19.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69116560 Antisense, RP_050317_02_H01, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.