MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.9 nTPM
HPA:74.9 nTPM
GTEx:165.4 nTPM
FANTOM5:399.3 Scaled Tags Per Million
Mouse:208.9 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.9
2411 Female, age 72, unknown 62.6
1827 Male, age 72, unknown 59.1
2828 Female, age 72, unknown 54.7
1870 Female, age 42, unknown 51.2
2219 Male, age 76, both hemispheres 48.2
1833 Male, age 53, unknown 46.3
2019 Male, age 18, unknown 45.3
2586 Male, age 75, left hemisphere 44.3
1830 Male, age 51, unknown 43.7
2666 Male, age 74, left hemisphere 43.7
Dorsal raphe nucleus
nTPM: 57.4
2298 Female, age 72, unknown 69.3
2047 Male, age 72, unknown 62.4
2750 Male, age 76, both hemispheres 58.4
1828 Male, age 53, unknown 49.9
2016 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 49.4
2097 Female, age 72, unknown 57.8
1848 Female, age 42, unknown 48.9
1890 Male, age 53, unknown 45.7
2849 Male, age 72, unknown 45.2
Median raphe nucleus
nTPM: 74.9
2220 Male, age 76, midline 74.9
Pedunculopontine tegmental nucleus
nTPM: 68.9
2334 Male, age 80, both hemispheres 73.7
2338 Male, age 61, both hemispheres 68.0
1921 Female, age 85, both hemispheres 65.1
Periaquaductal grey, anterior
nTPM: 58.1
1795 Male, age 51, unknown 61.8
1947 Male, age 18, unknown 57.4
2502 Female, age 75, unknown 55.1
Periaquaductal grey, dorsal
nTPM: 49.6
2850 Male, age 76, both hemispheres 54.0
1840 Male, age 53, unknown 49.6
1831 Male, age 72, unknown 47.5
2464 Female, age 72, unknown 47.5
Periaquaductal grey, lateral
nTPM: 50.4
2053 Male, age 18, unknown 51.5
2272 Male, age 74, both hemispheres 50.6
2140 Male, age 76, both hemispheres 49.2
Pretectal area
nTPM: 58.1
1816 Male, age 51, unknown 72.5
1944 Female, age 72, unknown 68.5
1817 Female, age 42, unknown 65.7
2007 Male, age 72, unknown 64.4
1815 Male, age 53, unknown 61.5
2224 Female, age 72, unknown 58.9
2667 Female, age 75, unknown 53.2
2825 Male, age 18, unknown 53.1
2316 Male, age 76, right hemisphere 48.2
2273 Male, age 74, both hemispheres 47.5
2407 Male, age 75, both hemispheres 45.3
Red nucleus
nTPM: 48.0
2725 Female, age 75, unknown 59.7
1821 Female, age 72, unknown 52.8
1954 Female, age 42, unknown 50.5
2588 Male, age 74, left hemisphere 48.3
2785 Male, age 18, unknown 48.0
2823 Male, age 76, right hemisphere 47.6
2584 Male, age 75, left hemisphere 47.4
1865 Male, age 51, unknown 46.6
1904 Male, age 53, unknown 45.4
2503 Female, age 72, unknown 44.4
2769 Male, age 72, unknown 43.2
2227 Male, age 72, unknown 42.5
Substantia nigra
nTPM: 62.0
1916 Female, age 42, unknown 83.1
2241 Male, age 72, unknown 72.6
1941 Male, age 53, unknown 67.0
1889 Female, age 72, unknown 66.2
1851 Male, age 51, unknown 62.9
2665 Male, age 74, both hemispheres 59.8
2699 Male, age 18, unknown 56.3
2409 Female, age 72, unknown 55.4
2590 Female, age 75, unknown 53.6
2583 Male, age 75, right hemisphere 43.6
Superior colliculus
nTPM: 50.1
2261 Male, age 18, unknown 60.7
1796 Male, age 53, unknown 59.3
2087 Female, age 72, unknown 59.0
2587 Male, age 74, left hemisphere 52.1
2668 Female, age 75, unknown 49.5
1913 Female, age 42, unknown 47.1
1895 Male, age 76, right hemisphere 46.0
1839 Male, age 51, unknown 45.6
1995 Male, age 72, unknown 42.5
2664 Male, age 75, both hemispheres 39.0
Ventral tegmental area
nTPM: 61.5
2218 Male, age 76, both hemispheres 67.4
1915 Female, age 42, unknown 66.3
2410 Female, age 72, unknown 65.2
2021 Male, age 53, unknown 59.2
1942 Male, age 51, unknown 57.0
2223 Female, age 72, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 165.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.4
Samples: 139

Max nTPM: 417.2
Min nTPM: 53.1
Std nTPM: 80.0
Median nTPM: 147.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 417.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 380.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 371.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 370.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 368.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 354.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 350.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 324.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 319.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 314.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 310.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 399.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 399.3
FF:10158-103A5 76 years, female 399.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 208.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 208.9
Samples: 4

Max nTPM: 221.8
Min nTPM: 193.7
Sample A Male 210.6
Sample B Male 209.5
Sample C Female 193.7
Sample D Female 221.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
69736076 Antisense, RP_050503_04_B06, Mouse strain C57BL/6J (56 days, male) 12.6
74736408 Antisense, RP_060306_01_D07, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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