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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:252.7 nTPM
HPA:252.7 nTPM
GTEx:166.4 nTPM
FANTOM5:662.3 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:72.1 nTPM
Allen mouse:2.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 252.7
Sample id Sample description nTPM
Amygdala
nTPM: 252.2
1987 Female, age 91, left hemisphere 326.0
2695 Female, age 67, right hemisphere 251.7
2514 Male, age 75, right hemisphere 248.3
2517 Female, age 94, left hemisphere 237.1
2814 Male, age 76, right hemisphere 197.9
Basal amygdala
nTPM: 224.5
2609 Male, age 75, right hemisphere 283.3
2243 Female, age 91, right hemisphere 265.3
2110 Male, age 80, left hemisphere 229.6
1955 Male, age 76, both hemispheres 214.9
2685 Female, age 94, left hemisphere 197.4
2827 Female, age 67, right hemisphere 156.5
Central amygdala
nTPM: 252.7
2515 Male, age 75, right hemisphere 333.9
2701 Female, age 91, right hemisphere 256.7
2239 Male, age 80, left hemisphere 246.5
1905 Male, age 76, both hemispheres 218.9
2826 Female, age 94, left hemisphere 207.6
Corticomedial amygdala
nTPM: 242.0
2242 Female, age 91, right hemisphere 298.0
2428 Male, age 75, right hemisphere 284.1
2829 Male, age 80, left hemisphere 243.4
2240 Male, age 76, both hemispheres 233.4
2429 Female, age 94, left hemisphere 220.6
2535 Female, age 67, right hemisphere 172.4
Lateral amygdala
nTPM: 217.6
2256 Male, age 80, left hemisphere 273.8
2516 Male, age 75, right hemisphere 252.0
2255 Female, age 91, right hemisphere 231.5
1883 Male, age 76, both hemispheres 192.9
2534 Female, age 94, left hemisphere 184.2
2830 Female, age 67, right hemisphere 171.5
Stria terminalis, bed nucleus
nTPM: 191.5
2201 Male, age 74, unknown 207.8
1974 Female, age 91, both hemispheres 187.0
2486 Female, age 94, both hemispheres 179.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 166.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 166.4
Samples: 152

Max nTPM: 820.9
Min nTPM: 34.5
Std nTPM: 101.8
Median nTPM: 135.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 820.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 501.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 466.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 455.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 411.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 402.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 386.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 376.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 369.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 366.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 334.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 327.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 326.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 318.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 304.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 278.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 269.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 266.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 261.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 258.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 248.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 245.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 236.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 236.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 235.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 229.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 220.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 220.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 215.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 215.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 208.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 200.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 199.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 194.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 194.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 191.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 188.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 184.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 183.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 183.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 181.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 179.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 178.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 178.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 178.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 177.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 175.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 173.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 173.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 168.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 168.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 168.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 166.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 164.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 162.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 159.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 158.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 158.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 157.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 155.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 155.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 150.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 149.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 148.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 148.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 147.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 147.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 144.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 144.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 144.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 143.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 143.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 140.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 139.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 139.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 135.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 134.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 134.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 133.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 132.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 132.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 132.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 132.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 129.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 129.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 128.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 128.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 126.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 126.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 125.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 125.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 124.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 124.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 120.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 119.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 118.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 116.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 116.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 111.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 111.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 110.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 110.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 109.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 109.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 108.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 108.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 107.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 107.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 107.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 106.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 105.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 104.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 104.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 103.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 103.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 101.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 101.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 99.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 98.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 97.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 95.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 94.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 93.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 93.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 92.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 91.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 90.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 90.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 85.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 85.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 84.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 84.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 79.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 77.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 76.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 71.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 71.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 70.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 69.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 64.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 51.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 49.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 39.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 34.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 662.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 662.3
FF:10151-102I7 76 years, female 662.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.2
Pig sample Sample description nTPM
Amygdala
nTPM: 59.2
Samples: 4

Max nTPM: 62.7
Min nTPM: 55.9
Sample A Female 55.9
Sample B Female 62.7
Sample C Male 56.9
Sample D Male 61.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 72.1
Samples: 4

Max nTPM: 74.6
Min nTPM: 68.4
Sample A Male 72.7
Sample B Male 68.4
Sample C Female 74.6
Sample D Female 72.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.3
77413704 Antisense, RP_070205_01_E07, Mouse strain C57BL/6J (56 days, male) 4.6
70919167 Antisense, RP_050712_04_C11, Mouse strain C57BL/6J (56 days, male) 0.0

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