BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:70.4 nTPM
HPA:70.4 nTPM
GTEx:59.3 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:61.3 nTPM
Mouse:29.6 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040596Antibody HPA040617
Glial cells LowLow
Neuronal cells MediumMedium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 70.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.5
1857 Female, age 85, left hemisphere 63.8
2288 Male, age 75, left hemisphere 63.2
2846 Female, age 79, unknown 61.9
1854 Male, age 80, left hemisphere 61.5
2290 Female, age 72, unknown 61.5
1781 Male, age 74, unknown 58.7
2481 Female, age 94, left hemisphere 53.5
2289 Male, age 61, right hemisphere 52.1
Claustrum
nTPM: 60.2
2568 Male, age 61, both hemispheres 63.4
2198 Male, age 80, both hemispheres 62.4
2645 Female, age 72, unknown 61.6
2196 Female, age 79, unknown 61.5
2491 Male, age 75, both hemispheres 60.9
2392 Female, age 94, both hemispheres 60.8
1956 Male, age 74, unknown 59.9
2284 Female, age 91, both hemispheres 59.6
2292 Female, age 85, both hemispheres 51.7
Globus pallidus, externus
nTPM: 60.0
2772 Female, age 79, unknown 70.1
2395 Male, age 75, both hemispheres 61.6
1996 Male, age 80, right hemisphere 59.3
2646 Male, age 61, right hemisphere 55.5
2567 Female, age 72, unknown 53.7
Globus pallidus, internus
nTPM: 60.5
1818 Male, age 74, unknown 66.6
2287 Male, age 75, right hemisphere 64.9
2483 Female, age 94, right hemisphere 62.7
2037 Male, age 80, right hemisphere 60.6
2778 Female, age 91, both hemispheres 59.6
2566 Female, age 72, unknown 56.3
2111 Female, age 85, right hemisphere 52.4
Nucleus accumbens
nTPM: 58.6
1856 Female, age 91, right hemisphere 63.5
2286 Male, age 75, left hemisphere 62.9
2698 Female, age 72, unknown 62.0
2391 Female, age 94, left hemisphere 57.9
2824 Male, age 61, right hemisphere 56.4
1806 Female, age 85, left hemisphere 56.1
1783 Male, age 74, unknown 55.5
2732 Male, age 80, right hemisphere 54.7
Nucleus basalis of Meynert
nTPM: 58.4
2821 Male, age 75, both hemispheres 62.7
2393 Male, age 80, right hemisphere 61.3
2484 Female, age 94, left hemisphere 54.9
2569 Male, age 61, both hemispheres 54.5
Nucleus of the diagonal band
nTPM: 70.4
1812 Female, age 91, both hemispheres 77.5
2775 Male, age 80, right hemisphere 75.0
2029 Male, age 61, right hemisphere 71.2
2195 Female, age 85, both hemispheres 67.1
1979 Male, age 74, unknown 61.1
Olfactory tubercle
nTPM: 68.0
1846 Male, age 80, right hemisphere 72.2
1998 Female, age 91, both hemispheres 69.4
2856 Male, age 75, right hemisphere 65.4
2487 Female, age 94, left hemisphere 65.1
Putamen
nTPM: 60.7
1838 Male, age 80, right hemisphere 67.0
2466 Female, age 79, unknown 62.2
1829 Male, age 74, unknown 61.6
1937 Female, age 91, right hemisphere 60.7
2489 Female, age 72, unknown 58.7
2647 Male, age 75, left hemisphere 58.5
2482 Female, age 94, left hemisphere 56.4
Septal nuclei
nTPM: 65.7
2031 Female, age 72, unknown 71.7
2009 Female, age 91, both hemispheres 71.3
2629 Female, age 94, right hemisphere 68.9
1960 Male, age 74, unknown 68.6
2394 Male, age 61, left hemisphere 66.2
2059 Female, age 85, both hemispheres 57.0
2199 Male, age 80, right hemisphere 56.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.3
Samples: 246

Max nTPM: 99.6
Min nTPM: 40.1
Std nTPM: 9.9
Median nTPM: 56.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 98.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 87.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 87.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 82.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 81.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 81.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 79.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 78.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 78.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 78.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.3
Samples: 246

Max nTPM: 186.0
Min nTPM: 30.4
Std nTPM: 14.1
Median nTPM: 57.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 186.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 130.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 109.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 103.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 100.0
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 94.8
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 91.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 91.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 87.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 84.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 82.7
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Brain - Putamen (basal ganglia)
Average nTPM: 58.6
Samples: 205

Max nTPM: 94.1
Min nTPM: 38.1
Std nTPM: 9.5
Median nTPM: 57.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 94.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 86.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 84.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 80.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 80.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 79.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 77.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 77.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 75.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 75.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 75.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.0
FF:10164-103B2 76 years, female 46.0
Globus pallidus
Scaled Tags Per Million: 47.5
FF:10175-103C4 60 years, female 55.2
FF:10161-103A8 76 years, female 39.7
Nucleus accumbens
Scaled Tags Per Million: 82.6
FF:10037-101F1 23-56 years, mixed 82.6
Putamen
Scaled Tags Per Million: 50.0
FF:10176-103C5 60 years, female 50.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 61.3
Pig sample Sample description nTPM
Caudate
nTPM: 56.8
Samples: 4

Max nTPM: 69.5
Min nTPM: 50.5
Sample A Female 50.5
Sample B Female 55.3
Sample C Male 69.5
Sample D Male 51.8
Putamen
nTPM: 61.3
Samples: 4

Max nTPM: 82.7
Min nTPM: 45.8
Sample A Female 45.8
Sample B Female 52.8
Sample C Male 82.7
Sample D Male 63.9
Septum
nTPM: 51.5
Samples: 4

Max nTPM: 58.1
Min nTPM: 45.5
Sample A Female 58.1
Sample B Female 54.3
Sample C Male 45.5
Sample D Male 48.0
Ventral pallidum
nTPM: 56.6
Samples: 4

Max nTPM: 65.4
Min nTPM: 49.2
Sample A Female 55.6
Sample B Female 56.0
Sample C Male 65.4
Sample D Male 49.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.9
Samples: 4

Max nTPM: 25.5
Min nTPM: 22.2
Sample A Male 23.2
Sample B Male 22.2
Sample C Female 25.5
Sample D Female 24.7
Septum
nTPM: 25.2
Samples: 4

Max nTPM: 27.3
Min nTPM: 23.2
Sample A Male 24.9
Sample B Male 27.3
Sample C Female 25.4
Sample D Female 23.2
Ventral forebrain
nTPM: 29.6
Samples: 4

Max nTPM: 30.4
Min nTPM: 29.0
Sample A Male 29.0
Sample B Male 29.8
Sample C Female 30.4
Sample D Female 29.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71147834 Antisense, RP_050719_02_E02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71147834 Antisense, RP_050719_02_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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