MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:89.1 nTPM
HPA:89.1 nTPM
GTEx:104.2 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:57.0 nTPM
Mouse:29.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.1
2219 Male, age 76, both hemispheres 80.5
1833 Male, age 53, unknown 69.2
2411 Female, age 72, unknown 69.2
2019 Male, age 18, unknown 68.8
2666 Male, age 74, left hemisphere 65.7
2586 Male, age 75, left hemisphere 62.8
1870 Female, age 42, unknown 62.4
1830 Male, age 51, unknown 62.1
1827 Male, age 72, unknown 60.8
2828 Female, age 72, unknown 59.0
Dorsal raphe nucleus
nTPM: 74.3
2047 Male, age 72, unknown 90.1
2750 Male, age 76, both hemispheres 78.6
2298 Female, age 72, unknown 73.4
1828 Male, age 53, unknown 70.2
2016 Female, age 72, unknown 59.1
Inferior colliculus
nTPM: 61.9
1890 Male, age 53, unknown 63.8
2849 Male, age 72, unknown 61.8
1848 Female, age 42, unknown 61.3
2097 Female, age 72, unknown 60.6
Median raphe nucleus
nTPM: 87.0
2220 Male, age 76, midline 87.0
Pedunculopontine tegmental nucleus
nTPM: 70.0
2334 Male, age 80, both hemispheres 76.6
1921 Female, age 85, both hemispheres 69.9
2338 Male, age 61, both hemispheres 63.6
Periaquaductal grey, anterior
nTPM: 61.6
1947 Male, age 18, unknown 64.4
2502 Female, age 75, unknown 61.7
1795 Male, age 51, unknown 58.7
Periaquaductal grey, dorsal
nTPM: 62.2
2850 Male, age 76, both hemispheres 68.0
1840 Male, age 53, unknown 64.2
1831 Male, age 72, unknown 59.9
2464 Female, age 72, unknown 56.5
Periaquaductal grey, lateral
nTPM: 57.3
2140 Male, age 76, both hemispheres 58.9
2272 Male, age 74, both hemispheres 57.9
2053 Male, age 18, unknown 55.1
Pretectal area
nTPM: 64.1
1817 Female, age 42, unknown 72.0
1944 Female, age 72, unknown 71.4
2007 Male, age 72, unknown 70.3
1815 Male, age 53, unknown 68.3
1816 Male, age 51, unknown 66.6
2407 Male, age 75, both hemispheres 62.2
2224 Female, age 72, unknown 61.4
2667 Female, age 75, unknown 60.8
2825 Male, age 18, unknown 58.0
2316 Male, age 76, right hemisphere 57.6
2273 Male, age 74, both hemispheres 56.7
Red nucleus
nTPM: 59.9
1821 Female, age 72, unknown 69.2
2584 Male, age 75, left hemisphere 66.9
2785 Male, age 18, unknown 64.5
1865 Male, age 51, unknown 60.4
2588 Male, age 74, left hemisphere 59.1
2725 Female, age 75, unknown 59.0
2823 Male, age 76, right hemisphere 58.3
2769 Male, age 72, unknown 57.1
2227 Male, age 72, unknown 56.9
2503 Female, age 72, unknown 56.8
1904 Male, age 53, unknown 55.8
1954 Female, age 42, unknown 55.3
Substantia nigra
nTPM: 89.1
1916 Female, age 42, unknown 124.0
1851 Male, age 51, unknown 105.2
1941 Male, age 53, unknown 96.2
2699 Male, age 18, unknown 96.1
2241 Male, age 72, unknown 95.4
2665 Male, age 74, both hemispheres 80.9
2409 Female, age 72, unknown 78.6
1889 Female, age 72, unknown 78.0
2583 Male, age 75, right hemisphere 71.1
2590 Female, age 75, unknown 66.0
Superior colliculus
nTPM: 63.6
2668 Female, age 75, unknown 88.4
1895 Male, age 76, right hemisphere 69.3
2087 Female, age 72, unknown 64.9
1796 Male, age 53, unknown 64.6
1839 Male, age 51, unknown 62.1
2664 Male, age 75, both hemispheres 61.8
2587 Male, age 74, left hemisphere 61.2
2261 Male, age 18, unknown 56.0
1913 Female, age 42, unknown 54.1
1995 Male, age 72, unknown 54.0
Ventral tegmental area
nTPM: 81.4
2218 Male, age 76, both hemispheres 97.1
1915 Female, age 42, unknown 92.1
2410 Female, age 72, unknown 86.1
2223 Female, age 72, unknown 75.1
1942 Male, age 51, unknown 72.1
2021 Male, age 53, unknown 66.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.2
Samples: 139

Max nTPM: 251.9
Min nTPM: 54.1
Std nTPM: 40.2
Median nTPM: 91.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 251.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 239.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 223.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 211.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 210.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 201.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 196.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 193.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 183.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 181.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 170.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.6
FF:10158-103A5 76 years, female 48.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.0
Pig sample Sample description nTPM
Midbrain
nTPM: 52.9
Samples: 4

Max nTPM: 66.2
Min nTPM: 42.9
Sample A Female 54.2
Sample B Female 42.9
Sample C Male 66.2
Sample D Male 48.3
Periaqueductal gray
nTPM: 38.2
Samples: 3

Max nTPM: 45.8
Min nTPM: 34.2
Sample B Female 34.2
Sample C Male 45.8
Sample D Male 34.7
Substantia nigra
nTPM: 57.1
Samples: 4

Max nTPM: 75.8
Min nTPM: 37.7
Sample A Female 75.2
Sample B Female 37.7
Sample C Male 75.8
Sample D Male 39.5
Superior colliculi
nTPM: 51.4
Samples: 4

Max nTPM: 67.5
Min nTPM: 28.5
Sample A Female 56.8
Sample B Female 28.5
Sample C Male 67.5
Sample D Male 52.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 30.6
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 29.7
Sample C Female 30.6
Sample D Female 29.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71147834 Antisense, RP_050719_02_E02, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.