MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.8 nTPM
HPA:26.8 nTPM
GTEx:33.2 nTPM
FANTOM5:126.1 Scaled Tags Per Million
Mouse:8.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2586 Male, age 75, left hemisphere 21.5
1870 Female, age 42, unknown 18.2
1833 Male, age 53, unknown 17.8
1827 Male, age 72, unknown 16.9
2666 Male, age 74, left hemisphere 16.9
2828 Female, age 72, unknown 16.8
2411 Female, age 72, unknown 16.4
1830 Male, age 51, unknown 16.3
2019 Male, age 18, unknown 15.9
2219 Male, age 76, both hemispheres 10.2
Dorsal raphe nucleus
nTPM: 18.0
2016 Female, age 72, unknown 21.4
2047 Male, age 72, unknown 18.2
1828 Male, age 53, unknown 17.7
2298 Female, age 72, unknown 16.9
2750 Male, age 76, both hemispheres 15.9
Inferior colliculus
nTPM: 18.0
1848 Female, age 42, unknown 19.3
2849 Male, age 72, unknown 18.0
1890 Male, age 53, unknown 17.9
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Pedunculopontine tegmental nucleus
nTPM: 15.9
2334 Male, age 80, both hemispheres 16.9
1921 Female, age 85, both hemispheres 16.0
2338 Male, age 61, both hemispheres 14.8
Periaquaductal grey, anterior
nTPM: 17.9
2502 Female, age 75, unknown 21.5
1795 Male, age 51, unknown 17.1
1947 Male, age 18, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 18.9
2850 Male, age 76, both hemispheres 22.0
1840 Male, age 53, unknown 18.3
1831 Male, age 72, unknown 17.7
2464 Female, age 72, unknown 17.5
Periaquaductal grey, lateral
nTPM: 20.6
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 18.9
2272 Male, age 74, both hemispheres 17.0
Pretectal area
nTPM: 16.5
2316 Male, age 76, right hemisphere 26.2
2825 Male, age 18, unknown 19.3
2273 Male, age 74, both hemispheres 17.2
2407 Male, age 75, both hemispheres 17.2
2667 Female, age 75, unknown 15.8
2224 Female, age 72, unknown 14.9
1944 Female, age 72, unknown 14.3
1816 Male, age 51, unknown 14.2
1817 Female, age 42, unknown 14.1
2007 Male, age 72, unknown 14.0
1815 Male, age 53, unknown 13.6
Red nucleus
nTPM: 16.0
2725 Female, age 75, unknown 21.3
2588 Male, age 74, left hemisphere 17.5
2769 Male, age 72, unknown 16.9
1821 Female, age 72, unknown 16.7
1865 Male, age 51, unknown 16.7
1954 Female, age 42, unknown 16.7
2227 Male, age 72, unknown 15.7
2785 Male, age 18, unknown 15.5
2823 Male, age 76, right hemisphere 15.5
1904 Male, age 53, unknown 13.9
2503 Female, age 72, unknown 13.9
2584 Male, age 75, left hemisphere 12.3
Substantia nigra
nTPM: 16.1
2699 Male, age 18, unknown 18.9
2665 Male, age 74, both hemispheres 17.6
2409 Female, age 72, unknown 17.3
1941 Male, age 53, unknown 16.2
2241 Male, age 72, unknown 16.0
2583 Male, age 75, right hemisphere 15.7
1851 Male, age 51, unknown 15.6
1916 Female, age 42, unknown 15.5
1889 Female, age 72, unknown 14.3
2590 Female, age 75, unknown 14.2
Superior colliculus
nTPM: 16.1
1796 Male, age 53, unknown 19.7
2664 Male, age 75, both hemispheres 18.9
1839 Male, age 51, unknown 17.9
1995 Male, age 72, unknown 17.5
1913 Female, age 42, unknown 17.1
2587 Male, age 74, left hemisphere 15.3
2087 Female, age 72, unknown 15.0
2261 Male, age 18, unknown 14.7
1895 Male, age 76, right hemisphere 13.2
2668 Female, age 75, unknown 11.6
Ventral tegmental area
nTPM: 16.0
2218 Male, age 76, both hemispheres 17.5
2223 Female, age 72, unknown 17.0
2021 Male, age 53, unknown 16.5
1915 Female, age 42, unknown 16.2
1942 Male, age 51, unknown 16.2
2410 Female, age 72, unknown 12.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 583.4
Min nTPM: 6.0
Std nTPM: 55.1
Median nTPM: 17.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 583.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 218.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 132.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 122.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 106.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 95.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 93.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 90.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 89.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 80.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 75.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.1
FF:10158-103A5 76 years, female 126.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 9.0
Min nTPM: 7.6
Sample A Male 7.9
Sample B Male 8.5
Sample C Female 7.6
Sample D Female 9.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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