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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:21.1 nTPM
HPA:21.1 nTPM
GTEx:43.8 nTPM
FANTOM5:315.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 15.2
2048 Male, age 55, midline 18.0
1981 Female, age 72, midline 16.0
2565 Male, age 75, midline 14.6
2194 Female, age 79, both hemispheres 14.4
2816 Male, age 47, midline 13.1
Cervical spinal cord, dorsal horn
nTPM: 16.2
2173 Female, age 72, unknown 19.1
2069 Male, age 47, both hemispheres 18.0
2721 Male, age 90, both hemispheres 16.5
2296 Male, age 66, both hemispheres 16.3
1877 Male, age 55, unknown 14.7
2297 Male, age 75, both hemispheres 12.6
Cervical spinal cord, ventral horn
nTPM: 21.1
2098 Female, age 72, unknown 45.1
2809 Male, age 90, both hemispheres 18.7
2068 Male, age 55, unknown 16.5
2295 Male, age 66, both hemispheres 15.7
2820 Female, age 79, both hemispheres 15.7
2480 Male, age 75, both hemispheres 15.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 43.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 43.8
Samples: 159

Max nTPM: 381.1
Min nTPM: 4.9
Std nTPM: 61.2
Median nTPM: 21.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 381.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 343.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 331.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 273.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 225.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 194.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 188.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 178.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 144.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 141.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 140.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 134.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 132.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 114.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 110.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 105.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 98.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 84.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 81.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 81.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 78.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 76.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 74.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 73.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 72.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 66.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 66.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 64.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 61.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 61.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 60.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 60.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 54.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 53.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 52.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 51.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 49.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 48.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 45.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 43.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 42.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 42.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 41.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 41.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 40.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 40.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 38.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 38.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 38.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 38.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 37.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 37.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 37.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 35.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 33.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 33.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 32.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 32.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 32.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 31.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 30.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 29.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 28.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 27.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 26.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 26.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 25.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 25.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 25.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 24.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 24.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 24.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 24.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 23.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 22.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 22.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 22.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 21.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 21.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 21.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 21.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 21.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 21.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 21.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 21.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 20.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 20.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 20.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 20.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 19.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 18.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 18.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 18.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 17.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 16.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 16.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 16.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 16.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 16.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 16.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 15.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 15.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 15.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 15.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 15.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 14.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 14.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 14.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 13.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 13.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 12.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 12.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 12.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 12.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 11.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 11.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 11.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 11.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 11.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 10.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 10.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 10.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 10.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 10.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 10.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 10.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 10.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 10.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 9.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 9.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 9.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 9.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 9.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 9.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 8.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 8.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 8.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 8.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 8.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 8.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 7.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 7.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 7.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 7.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 6.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 6.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 6.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 6.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 6.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 5.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 5.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 5.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 5.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 5.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 4.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 315.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 315.2
FF:10159-103A6 76 years, female 414.1
FF:10181-103D1 60 years, female 216.3

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