MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA:25.5 nTPM
GTEx:34.0 nTPM
FANTOM5:238.1 Scaled Tags Per Million
Pig:74.1 nTPM
Mouse:32.4 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.1
2666 Male, age 74, left hemisphere 26.8
2219 Male, age 76, both hemispheres 26.6
1827 Male, age 72, unknown 26.0
2411 Female, age 72, unknown 20.4
1833 Male, age 53, unknown 19.9
1870 Female, age 42, unknown 19.2
2586 Male, age 75, left hemisphere 19.2
2019 Male, age 18, unknown 19.1
2828 Female, age 72, unknown 18.1
1830 Male, age 51, unknown 16.1
Dorsal raphe nucleus
nTPM: 15.9
2750 Male, age 76, both hemispheres 20.2
2298 Female, age 72, unknown 17.9
2047 Male, age 72, unknown 16.9
1828 Male, age 53, unknown 16.5
2016 Female, age 72, unknown 7.8
Inferior colliculus
nTPM: 18.1
2849 Male, age 72, unknown 23.8
2097 Female, age 72, unknown 18.0
1848 Female, age 42, unknown 16.0
1890 Male, age 53, unknown 14.6
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Pedunculopontine tegmental nucleus
nTPM: 19.6
2334 Male, age 80, both hemispheres 23.0
1921 Female, age 85, both hemispheres 22.1
2338 Male, age 61, both hemispheres 13.6
Periaquaductal grey, anterior
nTPM: 18.9
2502 Female, age 75, unknown 21.4
1947 Male, age 18, unknown 19.8
1795 Male, age 51, unknown 15.5
Periaquaductal grey, dorsal
nTPM: 14.8
1840 Male, age 53, unknown 17.1
1831 Male, age 72, unknown 16.2
2464 Female, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 12.8
Periaquaductal grey, lateral
nTPM: 10.0
2053 Male, age 18, unknown 12.9
2140 Male, age 76, both hemispheres 8.7
2272 Male, age 74, both hemispheres 8.4
Pretectal area
nTPM: 24.0
1816 Male, age 51, unknown 38.9
1817 Female, age 42, unknown 33.4
1944 Female, age 72, unknown 31.9
1815 Male, age 53, unknown 31.8
2007 Male, age 72, unknown 31.2
2667 Female, age 75, unknown 19.0
2407 Male, age 75, both hemispheres 18.4
2825 Male, age 18, unknown 17.6
2224 Female, age 72, unknown 16.7
2316 Male, age 76, right hemisphere 14.3
2273 Male, age 74, both hemispheres 10.6
Red nucleus
nTPM: 21.2
1821 Female, age 72, unknown 28.2
2588 Male, age 74, left hemisphere 28.1
2725 Female, age 75, unknown 27.6
2584 Male, age 75, left hemisphere 23.4
2503 Female, age 72, unknown 23.3
1954 Female, age 42, unknown 19.7
2785 Male, age 18, unknown 19.2
1904 Male, age 53, unknown 17.9
2823 Male, age 76, right hemisphere 17.9
1865 Male, age 51, unknown 17.6
2769 Male, age 72, unknown 16.2
2227 Male, age 72, unknown 15.3
Substantia nigra
nTPM: 25.5
1916 Female, age 42, unknown 39.5
1851 Male, age 51, unknown 31.7
1941 Male, age 53, unknown 30.5
2699 Male, age 18, unknown 27.7
1889 Female, age 72, unknown 27.6
2409 Female, age 72, unknown 25.5
2241 Male, age 72, unknown 23.4
2590 Female, age 75, unknown 17.1
2583 Male, age 75, right hemisphere 16.6
2665 Male, age 74, both hemispheres 15.7
Superior colliculus
nTPM: 20.4
1895 Male, age 76, right hemisphere 26.3
2087 Female, age 72, unknown 24.5
2668 Female, age 75, unknown 23.7
2587 Male, age 74, left hemisphere 23.4
1796 Male, age 53, unknown 22.8
2261 Male, age 18, unknown 22.7
1839 Male, age 51, unknown 17.1
1913 Female, age 42, unknown 16.0
2664 Male, age 75, both hemispheres 14.8
1995 Male, age 72, unknown 12.9
Ventral tegmental area
nTPM: 21.9
2218 Male, age 76, both hemispheres 33.3
2410 Female, age 72, unknown 27.6
1915 Female, age 42, unknown 24.4
1942 Male, age 51, unknown 18.1
2223 Female, age 72, unknown 15.9
2021 Male, age 53, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.0
Samples: 139

Max nTPM: 79.8
Min nTPM: 13.6
Std nTPM: 12.3
Median nTPM: 31.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 78.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 76.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 71.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 60.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 58.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 57.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 55.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 55.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 52.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 238.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 238.1
FF:10158-103A5 76 years, female 238.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.1
Pig sample Sample description nTPM
Midbrain
nTPM: 74.1
Samples: 4

Max nTPM: 100.6
Min nTPM: 62.4
Sample A Female 67.6
Sample B Female 62.4
Sample C Male 100.6
Sample D Male 65.7
Periaqueductal gray
nTPM: 56.3
Samples: 3

Max nTPM: 61.7
Min nTPM: 50.0
Sample B Female 57.3
Sample C Male 61.7
Sample D Male 50.0
Substantia nigra
nTPM: 63.0
Samples: 4

Max nTPM: 78.1
Min nTPM: 50.8
Sample A Female 78.1
Sample B Female 50.8
Sample C Male 71.7
Sample D Male 51.4
Superior colliculi
nTPM: 66.8
Samples: 4

Max nTPM: 86.7
Min nTPM: 44.7
Sample A Female 67.5
Sample B Female 44.7
Sample C Male 86.7
Sample D Male 68.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.4
Samples: 4

Max nTPM: 35.1
Min nTPM: 28.9
Sample A Male 28.9
Sample B Male 33.2
Sample C Female 35.1
Sample D Female 32.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
634451 Antisense, RP_040914_01_A01, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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