MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:109.4 nTPM
HPA:109.4 nTPM
GTEx:100.1 nTPM
FANTOM5:84.6 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:123.4 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.5
2411 Female, age 72, unknown 109.2
1870 Female, age 42, unknown 106.8
2219 Male, age 76, both hemispheres 106.7
2019 Male, age 18, unknown 106.6
1827 Male, age 72, unknown 105.3
1833 Male, age 53, unknown 102.9
2828 Female, age 72, unknown 100.9
1830 Male, age 51, unknown 100.7
2666 Male, age 74, left hemisphere 98.7
2586 Male, age 75, left hemisphere 97.3
Dorsal raphe nucleus
nTPM: 106.8
2298 Female, age 72, unknown 116.0
2047 Male, age 72, unknown 107.4
2750 Male, age 76, both hemispheres 106.4
1828 Male, age 53, unknown 103.3
2016 Female, age 72, unknown 101.2
Inferior colliculus
nTPM: 103.4
1848 Female, age 42, unknown 104.8
2097 Female, age 72, unknown 104.1
1890 Male, age 53, unknown 102.7
2849 Male, age 72, unknown 102.1
Median raphe nucleus
nTPM: 105.7
2220 Male, age 76, midline 105.7
Pedunculopontine tegmental nucleus
nTPM: 107.1
2334 Male, age 80, both hemispheres 109.8
1921 Female, age 85, both hemispheres 106.4
2338 Male, age 61, both hemispheres 105.2
Periaquaductal grey, anterior
nTPM: 102.1
2502 Female, age 75, unknown 103.4
1795 Male, age 51, unknown 101.6
1947 Male, age 18, unknown 101.3
Periaquaductal grey, dorsal
nTPM: 102.3
1840 Male, age 53, unknown 106.4
2850 Male, age 76, both hemispheres 102.8
2464 Female, age 72, unknown 100.2
1831 Male, age 72, unknown 100.0
Periaquaductal grey, lateral
nTPM: 102.4
2272 Male, age 74, both hemispheres 106.4
2053 Male, age 18, unknown 101.5
2140 Male, age 76, both hemispheres 99.3
Pretectal area
nTPM: 105.4
2007 Male, age 72, unknown 110.0
1817 Female, age 42, unknown 109.9
1816 Male, age 51, unknown 109.5
2273 Male, age 74, both hemispheres 108.5
1944 Female, age 72, unknown 107.4
2224 Female, age 72, unknown 106.1
1815 Male, age 53, unknown 106.0
2667 Female, age 75, unknown 104.8
2825 Male, age 18, unknown 102.0
2316 Male, age 76, right hemisphere 98.0
2407 Male, age 75, both hemispheres 96.9
Red nucleus
nTPM: 104.0
1821 Female, age 72, unknown 113.7
2725 Female, age 75, unknown 109.1
2785 Male, age 18, unknown 105.6
2503 Female, age 72, unknown 105.4
1954 Female, age 42, unknown 104.7
1904 Male, age 53, unknown 104.0
2769 Male, age 72, unknown 103.1
2227 Male, age 72, unknown 102.3
2588 Male, age 74, left hemisphere 102.3
1865 Male, age 51, unknown 102.2
2823 Male, age 76, right hemisphere 101.5
2584 Male, age 75, left hemisphere 94.5
Substantia nigra
nTPM: 109.4
1916 Female, age 42, unknown 120.7
1851 Male, age 51, unknown 114.0
1889 Female, age 72, unknown 112.6
2241 Male, age 72, unknown 110.7
2409 Female, age 72, unknown 110.3
1941 Male, age 53, unknown 110.1
2699 Male, age 18, unknown 106.0
2665 Male, age 74, both hemispheres 105.3
2590 Female, age 75, unknown 104.6
2583 Male, age 75, right hemisphere 99.6
Superior colliculus
nTPM: 102.0
2587 Male, age 74, left hemisphere 108.3
1796 Male, age 53, unknown 106.7
1895 Male, age 76, right hemisphere 105.3
2261 Male, age 18, unknown 104.2
1839 Male, age 51, unknown 103.3
2087 Female, age 72, unknown 102.0
1913 Female, age 42, unknown 100.4
2668 Female, age 75, unknown 99.8
1995 Male, age 72, unknown 99.2
2664 Male, age 75, both hemispheres 90.5
Ventral tegmental area
nTPM: 106.3
2410 Female, age 72, unknown 113.6
1915 Female, age 42, unknown 112.9
2218 Male, age 76, both hemispheres 107.5
2223 Female, age 72, unknown 103.5
1942 Male, age 51, unknown 101.0
2021 Male, age 53, unknown 99.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.1
Samples: 139

Max nTPM: 155.0
Min nTPM: 65.5
Std nTPM: 19.1
Median nTPM: 96.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 155.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 154.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 154.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 153.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 150.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 147.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 146.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 141.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 141.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 138.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 135.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.6
FF:10158-103A5 76 years, female 84.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.1
Pig sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 70.4
Min nTPM: 47.4
Sample A Female 70.4
Sample B Female 50.1
Sample C Male 52.4
Sample D Male 47.4
Periaqueductal gray
nTPM: 44.8
Samples: 3

Max nTPM: 51.7
Min nTPM: 39.8
Sample B Female 42.9
Sample C Male 51.7
Sample D Male 39.8
Substantia nigra
nTPM: 53.4
Samples: 4

Max nTPM: 69.1
Min nTPM: 43.6
Sample A Female 69.1
Sample B Female 44.3
Sample C Male 56.7
Sample D Male 43.6
Superior colliculi
nTPM: 54.6
Samples: 4

Max nTPM: 60.9
Min nTPM: 50.4
Sample A Female 60.9
Sample B Female 52.2
Sample C Male 54.8
Sample D Male 50.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.4
Samples: 4

Max nTPM: 148.1
Min nTPM: 105.7
Sample A Male 148.1
Sample B Male 126.9
Sample C Female 113.0
Sample D Female 105.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
81600108 Antisense, RP_080205_02_D01, Mouse strain C57BL/6J (56 days, male) 17.3
413791 Antisense, RP_040809_01_E01, Mouse strain C57BL/6J (56 days, male) 14.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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