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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:694.3 nTPM
HPA:694.3 nTPM
GTEx:562.1 nTPM
FANTOM5:1061.6 Scaled Tags Per Million
Pig:443.4 nTPM
Mouse:1216.4 nTPM
Allen mouse:10.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 694.3
Sample id Sample description nTPM
Amygdala
nTPM: 692.3
2814 Male, age 76, right hemisphere 737.1
2514 Male, age 75, right hemisphere 709.3
1987 Female, age 91, left hemisphere 689.7
2695 Female, age 67, right hemisphere 675.6
2517 Female, age 94, left hemisphere 649.7
Basal amygdala
nTPM: 653.6
2609 Male, age 75, right hemisphere 704.4
2110 Male, age 80, left hemisphere 675.1
2243 Female, age 91, right hemisphere 674.4
1955 Male, age 76, both hemispheres 654.9
2685 Female, age 94, left hemisphere 619.8
2827 Female, age 67, right hemisphere 593.0
Central amygdala
nTPM: 694.3
2515 Male, age 75, right hemisphere 772.2
2701 Female, age 91, right hemisphere 702.0
1905 Male, age 76, both hemispheres 692.5
2239 Male, age 80, left hemisphere 687.1
2826 Female, age 94, left hemisphere 617.6
Corticomedial amygdala
nTPM: 668.7
2428 Male, age 75, right hemisphere 733.4
2242 Female, age 91, right hemisphere 686.0
2829 Male, age 80, left hemisphere 686.0
2429 Female, age 94, left hemisphere 671.9
2240 Male, age 76, both hemispheres 646.0
2535 Female, age 67, right hemisphere 588.7
Lateral amygdala
nTPM: 658.9
2516 Male, age 75, right hemisphere 704.6
1883 Male, age 76, both hemispheres 681.3
2255 Female, age 91, right hemisphere 670.0
2256 Male, age 80, left hemisphere 666.0
2830 Female, age 67, right hemisphere 624.6
2534 Female, age 94, left hemisphere 606.9
Stria terminalis, bed nucleus
nTPM: 646.9
2486 Female, age 94, both hemispheres 648.5
2201 Male, age 74, unknown 647.1
1974 Female, age 91, both hemispheres 645.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 562.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 562.1
Samples: 152

Max nTPM: 1985.9
Min nTPM: 160.8
Std nTPM: 260.9
Median nTPM: 524.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1985.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1385.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1331.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1232.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1183.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1114.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1108.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1015.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 996.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 986.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 973.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 955.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 858.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 857.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 851.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 846.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 842.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 834.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 833.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 830.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 821.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 808.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 796.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 790.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 775.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 768.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 741.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 736.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 735.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 734.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 726.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 711.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 708.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 707.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 707.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 702.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 700.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 696.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 694.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 693.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 672.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 669.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 666.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 666.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 653.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 649.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 646.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 644.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 639.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 638.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 633.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 628.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 587.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 585.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 582.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 579.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 575.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 573.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 572.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 562.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 558.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 556.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 552.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 551.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 548.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 548.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 547.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 547.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 544.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 540.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 536.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 535.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 531.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 531.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 528.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 526.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 522.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 521.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 521.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 521.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 514.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 508.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 508.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 499.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 499.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 495.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 489.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 487.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 486.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 484.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 483.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 475.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 468.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 463.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 461.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 461.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 456.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 455.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 442.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 431.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 422.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 419.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 418.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 417.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 415.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 413.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 409.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 406.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 401.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 400.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 394.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 393.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 389.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 387.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 384.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 372.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 372.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 371.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 367.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 364.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 358.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 347.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 343.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 331.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 328.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 324.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 322.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 317.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 313.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 305.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 300.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 300.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 298.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 291.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 290.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 288.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 285.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 279.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 277.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 271.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 267.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 252.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 251.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 247.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 244.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 235.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 233.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 228.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 226.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 222.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 214.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 160.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1061.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1061.6
FF:10151-102I7 76 years, female 1061.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 443.4
Pig sample Sample description nTPM
Amygdala
nTPM: 443.4
Samples: 4

Max nTPM: 512.0
Min nTPM: 397.4
Sample A Female 400.9
Sample B Female 512.0
Sample C Male 463.2
Sample D Male 397.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1216.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 1216.4
Samples: 4

Max nTPM: 1576.7
Min nTPM: 923.1
Sample A Male 923.1
Sample B Male 1125.3
Sample C Female 1576.7
Sample D Female 1240.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.8
67978757 Antisense, RP_040923_01_G08, Mouse strain C57BL/6J (56 days, male) 15.2
74047918 Antisense, RP_051214_02_D03, Mouse strain C57BL/6J (56 days, male) 11.9
74988768 Antisense, RP_060315_05_H12, Mouse strain C57BL/6J (56 days, male) 8.3
70919872 Antisense, RP_050713_02_C01, Mouse strain C57BL/6J (56 days, male) 7.6

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