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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:891.1 nTPM
GTEx:891.1 nTPM
FANTOM5:490.7 Scaled Tags Per Million
Pig:501.6 nTPM
Mouse:2524.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 891.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 891.1
Samples: 105

Max nTPM: 2111.3
Min nTPM: 283.0
Std nTPM: 285.9
Median nTPM:
137_1 83 years, male 2111.3
501_1 88 years, male 1681.3
17_1 71 years, male 1608.4
35_1 74 years, female 1447.8
237_1 82 years, male 1379.1
295_1 61 years, female 1373.4
42_1 85 years, male 1371.0
4_1 88 years, female 1348.7
41_1 94 years, female 1304.6
264_1 73 years, female 1290.1
375_1 74 years, female 1289.9
452_1 88 years, female 1231.5
379_1 60 years, male 1218.7
173_1 67 years, male 1212.6
120_1 70 years, female 1197.7
518_1 75 years, female 1192.9
314_1 67 years, male 1192.6
315_1 62 years, female 1145.1
322_1 76 years, male 1122.4
139_1 64 years, female 1113.6
491_1 89 years, female 1111.7
18_1 88 years, male 1100.5
316_1 62 years, male 1090.4
218_1 71 years, female 1071.3
384_1 83 years, male 1066.5
396_1 62 years, male 1066.3
506_1 65 years, male 1036.5
145_1 84 years, male 1018.0
109_1 81 years, female 1010.4
142_1 61 years, female 995.1
348_1 84 years, male 988.9
351_1 91 years, male 987.7
162_1 79 years, female 987.2
81_1 67 years, male 974.4
354_1 81 years, female 969.3
389_1 86 years, female 950.2
266_1 85 years, male 936.7
386_1 76 years, male 930.4
119_1 70 years, female 918.4
288_1 66 years, female 911.6
308_1 70 years, female 908.8
414_1 84 years, female 908.1
265_1 87 years, male 902.1
405_1 91 years, male 901.3
189_1 76 years, male 901.1
347_1 72 years, male 894.8
319_1 81 years, male 891.8
447_1 81 years, male 883.5
318_1 68 years, male 882.8
394_1 75 years, female 878.0
377_1 82 years, female 849.8
149_1 88 years, male 848.2
413_1 59 years, female 846.2
404_1 82 years, female 820.4
126_1 63 years, male 811.3
286_1 68 years, female 810.4
43_1 64 years, female 808.5
349_1 83 years, male 808.2
353_1 82 years, female 808.0
117_1 61 years, male 802.1
6_1 73 years, female 794.7
313_1 79 years, female 789.6
490_1 67 years, female 785.6
356_1 87 years, female 777.9
376_1 75 years, female 776.5
495_1 57 years, female 773.3
311_1 78 years, male 772.3
99_1 64 years, male 764.4
350_1 84 years, female 741.7
217_1 76 years, male 732.2
292_1 71 years, male 725.1
243_1 75 years, male 723.8
320_1 89 years, female 722.7
254_1 77 years, female 720.3
115_1 83 years, male 716.0
229_1 69 years, female 708.4
324_1 76 years, male 708.1
503_1 68 years, male 703.3
153_1 70 years, female 691.0
89_1 63 years, male 686.0
415_1 77 years, female 685.8
251_1 78 years, male 675.6
352_1 62 years, male 671.3
32_1 67 years, male 669.8
291_1 76 years, male 667.1
177_1 74 years, male 665.7
466_1 57 years, female 661.3
480_1 63 years, male 661.3
9_1 66 years, female 660.6
406_1 79 years, male 638.2
246_1 77 years, male 636.6
335_1 73 years, female 633.0
355_1 70 years, female 610.4
307_1 66 years, female 608.3
468_1 89 years, male 602.9
517_1 88 years, male 589.9
499_1 55 years, female 563.4
172_1 72 years, female 552.8
163_1 78 years, male 552.2
2_1 77 years, female 545.5
526_1 61 years, male 539.8
425_1 59 years, female 530.3
321_1 62 years, female 431.1
317_1 60 years, male 301.8
293_1 68 years, female 283.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 490.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 490.7
FF:10030-101E3 24-65 years, mixed 490.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 501.6
Pig sample Sample description nTPM
Retina
nTPM: 501.6
Samples: 4

Max nTPM: 636.4
Min nTPM: 379.9
Sample A Female 430.7
Sample B Female 559.5
Sample C Male 636.4
Sample D Male 379.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2524.9
Mouse sample Sample description nTPM
Retina
nTPM: 2524.9
Samples: 4

Max nTPM: 2790.4
Min nTPM: 2209.9
Sample A Male 2790.4
Sample B Male 2209.9
Sample C Female 2688.3
Sample D Female 2410.9

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