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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:909.4 nTPM
HPA:909.4 nTPM
GTEx:289.1 nTPM
FANTOM5:1120.7 Scaled Tags Per Million
Pig:350.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 909.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 847.2
1981 Female, age 72, midline 911.6
2565 Male, age 75, midline 857.5
2048 Male, age 55, midline 840.8
2816 Male, age 47, midline 818.8
2194 Female, age 79, both hemispheres 807.3
Cervical spinal cord, dorsal horn
nTPM: 839.1
2173 Female, age 72, unknown 949.5
2721 Male, age 90, both hemispheres 931.3
1877 Male, age 55, unknown 898.4
2297 Male, age 75, both hemispheres 771.3
2069 Male, age 47, both hemispheres 760.2
2296 Male, age 66, both hemispheres 723.9
Cervical spinal cord, ventral horn
nTPM: 909.4
2809 Male, age 90, both hemispheres 1123.9
2295 Male, age 66, both hemispheres 1084.4
2098 Female, age 72, unknown 874.2
2480 Male, age 75, both hemispheres 836.9
2068 Male, age 55, unknown 774.0
2820 Female, age 79, both hemispheres 762.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 289.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 289.1
Samples: 159

Max nTPM: 800.6
Min nTPM: 91.9
Std nTPM: 136.9
Median nTPM: 258.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 800.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 749.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 722.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 668.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 662.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 661.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 570.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 563.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 557.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 535.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 516.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 473.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 465.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 460.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 460.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 460.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 460.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 459.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 449.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 447.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 432.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 429.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 422.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 416.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 408.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 400.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 396.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 396.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 396.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 395.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 389.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 386.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 384.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 379.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 377.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 374.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 372.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 370.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 370.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 370.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 370.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 363.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 355.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 353.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 343.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 343.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 342.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 339.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 334.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 330.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 328.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 328.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 326.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 320.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 318.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 317.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 313.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 313.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 310.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 305.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 304.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 296.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 293.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 292.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 291.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 286.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 285.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 285.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 282.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 278.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 276.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 272.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 267.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 266.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 265.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 264.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 262.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 260.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 260.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 258.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 258.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 257.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 257.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 254.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 254.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 251.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 251.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 249.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 248.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 244.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 241.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 240.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 239.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 239.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 239.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 237.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 237.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 233.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 232.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 225.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 224.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 223.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 220.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 219.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 219.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 218.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 218.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 212.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 211.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 209.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 209.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 204.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 203.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 203.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 200.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 199.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 198.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 198.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 198.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 194.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 193.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 192.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 190.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 190.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 188.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 184.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 182.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 179.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 178.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 177.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 174.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 169.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 165.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 165.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 163.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 155.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 154.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 153.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 151.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 147.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 141.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 139.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 139.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 138.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 129.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 121.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 113.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 113.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 111.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 103.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 103.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 102.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 100.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 95.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 92.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 91.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1120.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1120.7
FF:10181-103D1 60 years, female 1461.7
FF:10159-103A6 76 years, female 779.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 350.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 304.2
Samples: 4

Max nTPM: 324.8
Min nTPM: 286.4
Sample A Female 312.3
Sample B Female 324.8
Sample C Male 293.3
Sample D Male 286.4
Ventral spinal cord
nTPM: 350.8
Samples: 4

Max nTPM: 370.2
Min nTPM: 323.2
Sample A Female 345.0
Sample B Female 370.2
Sample C Male 323.2
Sample D Male 364.8

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