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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:120.3 nTPM
HPA:120.3 nTPM
GTEx:138.6 nTPM
FANTOM5:149.8 Scaled Tags Per Million
Pig:40.4 nTPM
Mouse:224.6 nTPM
Allen mouse:11.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 120.3
Sample id Sample description nTPM
Amygdala
nTPM: 120.3
2514 Male, age 75, right hemisphere 132.0
1987 Female, age 91, left hemisphere 124.6
2814 Male, age 76, right hemisphere 123.2
2695 Female, age 67, right hemisphere 112.3
2517 Female, age 94, left hemisphere 109.3
Basal amygdala
nTPM: 106.4
2609 Male, age 75, right hemisphere 132.4
1955 Male, age 76, both hemispheres 111.9
2110 Male, age 80, left hemisphere 106.9
2243 Female, age 91, right hemisphere 106.3
2685 Female, age 94, left hemisphere 104.5
2827 Female, age 67, right hemisphere 76.7
Central amygdala
nTPM: 111.5
2515 Male, age 75, right hemisphere 121.5
1905 Male, age 76, both hemispheres 117.8
2701 Female, age 91, right hemisphere 114.0
2239 Male, age 80, left hemisphere 107.6
2826 Female, age 94, left hemisphere 96.6
Corticomedial amygdala
nTPM: 111.7
2428 Male, age 75, right hemisphere 129.8
2242 Female, age 91, right hemisphere 121.0
2829 Male, age 80, left hemisphere 117.5
2429 Female, age 94, left hemisphere 110.9
2240 Male, age 76, both hemispheres 107.7
2535 Female, age 67, right hemisphere 83.0
Lateral amygdala
nTPM: 100.8
2516 Male, age 75, right hemisphere 119.1
1883 Male, age 76, both hemispheres 114.5
2255 Female, age 91, right hemisphere 106.0
2256 Male, age 80, left hemisphere 96.9
2534 Female, age 94, left hemisphere 94.8
2830 Female, age 67, right hemisphere 73.8
Stria terminalis, bed nucleus
nTPM: 106.8
2201 Male, age 74, unknown 111.7
2486 Female, age 94, both hemispheres 105.2
1974 Female, age 91, both hemispheres 103.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 138.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 138.6
Samples: 152

Max nTPM: 385.7
Min nTPM: 28.3
Std nTPM: 59.0
Median nTPM: 135.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 385.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 271.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 270.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 265.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 263.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 254.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 254.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 248.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 246.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 240.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 238.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 237.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 237.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 223.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 215.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 211.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 209.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 205.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 203.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 202.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 202.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 199.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 197.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 195.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 190.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 188.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 185.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 182.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 182.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 178.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 176.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 175.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 174.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 174.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 173.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 173.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 172.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 172.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 171.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 171.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 169.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 169.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 169.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 168.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 166.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 164.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 163.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 163.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 161.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 159.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 157.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 156.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 156.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 156.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 155.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 153.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 153.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 152.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 149.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 147.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 144.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 143.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 143.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 142.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 141.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 140.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 138.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 137.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 136.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 136.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 136.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 135.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 134.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 134.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 131.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 131.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 129.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 128.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 128.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 127.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 126.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 124.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 123.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 123.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 122.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 121.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 120.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 119.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 117.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 114.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 114.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 109.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 108.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 107.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 106.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 103.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 102.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 99.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 98.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 97.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 96.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 95.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 94.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 92.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 92.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 90.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 89.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 87.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 85.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 85.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 84.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 81.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 81.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 80.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 77.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 77.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 77.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 76.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 74.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 69.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 60.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 57.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 54.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 51.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 51.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 49.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 46.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 37.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 35.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 31.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 149.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 149.8
FF:10151-102I7 76 years, female 149.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.4
Pig sample Sample description nTPM
Amygdala
nTPM: 40.4
Samples: 4

Max nTPM: 46.6
Min nTPM: 33.8
Sample A Female 46.6
Sample B Female 37.2
Sample C Male 44.1
Sample D Male 33.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 224.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 224.7
Samples: 4

Max nTPM: 235.5
Min nTPM: 211.4
Sample A Male 219.2
Sample B Male 211.4
Sample C Female 235.5
Sample D Female 232.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.6
70429429 Antisense, RP_050614_01_F06, Mouse strain C57BL/6J (56 days, male) 13.5
74047768 Antisense, RP_051214_01_H06, Mouse strain C57BL/6J (56 days, male) 9.7

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