MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:152.6 nTPM
HPA:152.6 nTPM
GTEx:142.8 nTPM
FANTOM5:115.0 Scaled Tags Per Million
Pig:63.4 nTPM
Mouse:418.5 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.3
2586 Male, age 75, left hemisphere 171.9
1870 Female, age 42, unknown 136.6
1833 Male, age 53, unknown 133.5
2828 Female, age 72, unknown 130.2
1827 Male, age 72, unknown 128.7
1830 Male, age 51, unknown 120.0
2411 Female, age 72, unknown 113.9
2219 Male, age 76, both hemispheres 105.2
2666 Male, age 74, left hemisphere 104.8
2019 Male, age 18, unknown 97.9
Dorsal raphe nucleus
nTPM: 144.1
2016 Female, age 72, unknown 160.4
1828 Male, age 53, unknown 156.6
2298 Female, age 72, unknown 146.3
2047 Male, age 72, unknown 138.5
2750 Male, age 76, both hemispheres 118.9
Inferior colliculus
nTPM: 152.6
1848 Female, age 42, unknown 161.8
2097 Female, age 72, unknown 156.7
1890 Male, age 53, unknown 146.2
2849 Male, age 72, unknown 145.8
Median raphe nucleus
nTPM: 115.3
2220 Male, age 76, midline 115.3
Pedunculopontine tegmental nucleus
nTPM: 120.8
1921 Female, age 85, both hemispheres 128.4
2334 Male, age 80, both hemispheres 121.6
2338 Male, age 61, both hemispheres 112.3
Periaquaductal grey, anterior
nTPM: 146.4
1947 Male, age 18, unknown 181.0
1795 Male, age 51, unknown 133.2
2502 Female, age 75, unknown 125.0
Periaquaductal grey, dorsal
nTPM: 139.9
1840 Male, age 53, unknown 157.1
2850 Male, age 76, both hemispheres 141.6
2464 Female, age 72, unknown 138.6
1831 Male, age 72, unknown 122.2
Periaquaductal grey, lateral
nTPM: 141.3
2053 Male, age 18, unknown 163.2
2140 Male, age 76, both hemispheres 139.5
2272 Male, age 74, both hemispheres 121.3
Pretectal area
nTPM: 133.6
2667 Female, age 75, unknown 153.6
2825 Male, age 18, unknown 151.0
2273 Male, age 74, both hemispheres 145.0
2224 Female, age 72, unknown 144.4
1817 Female, age 42, unknown 135.9
1944 Female, age 72, unknown 134.1
2316 Male, age 76, right hemisphere 126.9
1816 Male, age 51, unknown 125.9
2407 Male, age 75, both hemispheres 121.6
1815 Male, age 53, unknown 118.4
2007 Male, age 72, unknown 112.1
Red nucleus
nTPM: 131.2
1821 Female, age 72, unknown 154.4
1954 Female, age 42, unknown 145.3
2769 Male, age 72, unknown 142.8
2227 Male, age 72, unknown 141.1
2503 Female, age 72, unknown 140.6
2823 Male, age 76, right hemisphere 134.8
2725 Female, age 75, unknown 134.3
1904 Male, age 53, unknown 130.9
1865 Male, age 51, unknown 127.1
2584 Male, age 75, left hemisphere 114.8
2588 Male, age 74, left hemisphere 112.5
2785 Male, age 18, unknown 96.1
Substantia nigra
nTPM: 131.0
2699 Male, age 18, unknown 158.8
1916 Female, age 42, unknown 146.0
2241 Male, age 72, unknown 139.8
1889 Female, age 72, unknown 138.1
1851 Male, age 51, unknown 136.5
2409 Female, age 72, unknown 123.7
2583 Male, age 75, right hemisphere 122.3
2590 Female, age 75, unknown 120.9
1941 Male, age 53, unknown 113.2
2665 Male, age 74, both hemispheres 111.0
Superior colliculus
nTPM: 125.5
1995 Male, age 72, unknown 132.1
2087 Female, age 72, unknown 131.0
1839 Male, age 51, unknown 130.0
2664 Male, age 75, both hemispheres 129.7
1796 Male, age 53, unknown 128.8
2668 Female, age 75, unknown 128.5
2261 Male, age 18, unknown 120.7
1913 Female, age 42, unknown 119.2
1895 Male, age 76, right hemisphere 117.9
2587 Male, age 74, left hemisphere 116.7
Ventral tegmental area
nTPM: 129.3
1915 Female, age 42, unknown 148.1
1942 Male, age 51, unknown 135.8
2410 Female, age 72, unknown 133.1
2021 Male, age 53, unknown 123.6
2218 Male, age 76, both hemispheres 120.3
2223 Female, age 72, unknown 114.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 142.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.8
Samples: 139

Max nTPM: 397.6
Min nTPM: 14.6
Std nTPM: 78.8
Median nTPM: 132.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 397.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 392.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 365.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 358.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 355.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 349.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 326.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 316.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 315.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 270.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 267.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.0
FF:10158-103A5 76 years, female 115.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.4
Pig sample Sample description nTPM
Midbrain
nTPM: 63.4
Samples: 4

Max nTPM: 75.9
Min nTPM: 52.5
Sample A Female 58.0
Sample B Female 52.5
Sample C Male 75.9
Sample D Male 67.1
Periaqueductal gray
nTPM: 46.1
Samples: 3

Max nTPM: 53.1
Min nTPM: 37.7
Sample B Female 53.1
Sample C Male 47.6
Sample D Male 37.7
Substantia nigra
nTPM: 58.2
Samples: 4

Max nTPM: 62.4
Min nTPM: 50.2
Sample A Female 62.4
Sample B Female 50.2
Sample C Male 59.8
Sample D Male 60.3
Superior colliculi
nTPM: 63.2
Samples: 4

Max nTPM: 68.6
Min nTPM: 52.3
Sample A Female 68.4
Sample B Female 68.6
Sample C Male 52.3
Sample D Male 63.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 418.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 418.5
Samples: 4

Max nTPM: 440.4
Min nTPM: 408.1
Sample A Male 440.4
Sample B Male 408.1
Sample C Female 409.3
Sample D Female 416.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
70429429 Antisense, RP_050614_01_F06, Mouse strain C57BL/6J (56 days, male) 11.8
74047768 Antisense, RP_051214_01_H06, Mouse strain C57BL/6J (56 days, male) 9.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.