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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:141.1 nTPM
HPA:141.1 nTPM
GTEx:51.6 nTPM
FANTOM5:188.3 Scaled Tags Per Million
Pig:62.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 141.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 134.7
2048 Male, age 55, midline 153.1
1981 Female, age 72, midline 151.4
2565 Male, age 75, midline 132.5
2194 Female, age 79, both hemispheres 118.7
2816 Male, age 47, midline 117.8
Cervical spinal cord, dorsal horn
nTPM: 141.1
2721 Male, age 90, both hemispheres 162.5
2173 Female, age 72, unknown 152.8
1877 Male, age 55, unknown 143.6
2069 Male, age 47, both hemispheres 136.8
2297 Male, age 75, both hemispheres 125.6
2296 Male, age 66, both hemispheres 125.3
Cervical spinal cord, ventral horn
nTPM: 127.9
2098 Female, age 72, unknown 162.1
2295 Male, age 66, both hemispheres 135.1
2809 Male, age 90, both hemispheres 131.5
2068 Male, age 55, unknown 117.5
2480 Male, age 75, both hemispheres 116.0
2820 Female, age 79, both hemispheres 105.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 51.6
Samples: 159

Max nTPM: 216.3
Min nTPM: 11.6
Std nTPM: 28.8
Median nTPM: 46.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 216.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 127.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 127.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 126.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 126.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 113.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 110.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 109.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 103.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 102.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 101.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 98.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 96.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 94.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 94.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 94.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 89.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 87.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 86.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 85.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 82.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 77.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 76.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 76.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 75.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 74.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 74.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 74.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 73.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 72.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 71.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 70.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 69.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 68.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 67.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 66.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 66.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 66.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 65.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 62.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 62.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 61.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 61.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 61.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 61.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 60.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 58.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 58.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 57.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 56.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 56.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 56.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 56.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 55.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 55.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 55.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 55.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 54.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 54.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 52.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 52.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 51.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 50.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 50.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 50.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 49.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 48.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 48.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 48.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 48.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 47.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 47.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 47.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 47.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 47.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 47.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 46.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 46.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 46.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 46.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 46.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 46.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 45.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 45.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 44.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 44.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 44.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 43.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 43.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 43.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 42.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 42.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 42.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 42.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 41.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 41.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 40.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 40.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 40.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 39.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 39.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 39.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 38.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 37.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 36.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 36.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 36.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 35.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 34.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 34.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 34.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 34.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 34.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 33.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 32.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 32.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 32.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 31.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 30.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 30.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 30.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 30.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 29.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 28.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 28.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 28.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 28.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 28.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 27.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 27.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 27.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 26.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 26.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 25.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 25.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 24.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 24.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 23.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 23.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 22.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 22.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 22.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 21.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 21.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 20.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 19.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 19.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 18.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 18.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 18.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 17.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 17.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 16.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 16.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 15.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 14.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 13.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 11.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 188.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 188.3
FF:10181-103D1 60 years, female 244.7
FF:10159-103A6 76 years, female 131.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 62.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 49.5
Samples: 4

Max nTPM: 55.6
Min nTPM: 37.3
Sample A Female 55.0
Sample B Female 37.3
Sample C Male 55.6
Sample D Male 50.2
Ventral spinal cord
nTPM: 62.0
Samples: 4

Max nTPM: 73.5
Min nTPM: 45.1
Sample A Female 67.7
Sample B Female 61.6
Sample C Male 73.5
Sample D Male 45.1

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