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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:269.7 nTPM
HPA:269.7 nTPM
GTEx:298.0 nTPM
FANTOM5:382.3 Scaled Tags Per Million
Pig:105.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 269.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 269.7
2565 Male, age 75, midline 280.2
2816 Male, age 47, midline 273.6
2194 Female, age 79, both hemispheres 271.5
1981 Female, age 72, midline 268.0
2048 Male, age 55, midline 255.3
Cervical spinal cord, dorsal horn
nTPM: 266.3
2296 Male, age 66, both hemispheres 303.0
2173 Female, age 72, unknown 290.4
1877 Male, age 55, unknown 257.5
2069 Male, age 47, both hemispheres 255.9
2721 Male, age 90, both hemispheres 246.5
2297 Male, age 75, both hemispheres 244.4
Cervical spinal cord, ventral horn
nTPM: 269.3
2820 Female, age 79, both hemispheres 285.7
2068 Male, age 55, unknown 274.0
2480 Male, age 75, both hemispheres 268.6
2809 Male, age 90, both hemispheres 267.3
2098 Female, age 72, unknown 261.4
2295 Male, age 66, both hemispheres 258.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 298.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 298.0
Samples: 159

Max nTPM: 523.9
Min nTPM: 128.8
Std nTPM: 74.1
Median nTPM: 297.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 523.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 489.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 472.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 448.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 437.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 421.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 421.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 421.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 421.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 420.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 411.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 410.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 408.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 406.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 402.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 402.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 396.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 395.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 393.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 392.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 391.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 386.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 383.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 382.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 380.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 374.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 372.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 371.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 370.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 366.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 363.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 360.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 360.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 358.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 355.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 354.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 348.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 347.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 347.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 346.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 344.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 344.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 341.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 341.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 341.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 340.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 340.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 339.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 336.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 335.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 332.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 330.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 329.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 328.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 328.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 328.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 321.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 321.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 320.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 319.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 318.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 318.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 317.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 314.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 313.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 311.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 310.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 310.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 309.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 308.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 307.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 307.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 306.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 305.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 303.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 300.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 300.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 299.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 298.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 297.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 295.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 292.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 291.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 288.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 286.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 285.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 285.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 284.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 279.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 279.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 277.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 277.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 277.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 276.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 275.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 273.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 271.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 269.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 269.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 269.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 267.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 267.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 267.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 266.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 265.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 264.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 263.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 262.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 261.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 259.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 258.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 258.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 257.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 253.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 247.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 247.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 247.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 243.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 243.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 242.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 240.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 236.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 234.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 233.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 233.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 231.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 229.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 226.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 226.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 225.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 225.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 225.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 224.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 223.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 222.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 216.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 212.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 211.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 208.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 207.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 205.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 204.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 200.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 199.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 198.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 197.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 197.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 195.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 190.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 187.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 187.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 186.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 180.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 180.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 180.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 179.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 161.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 136.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 128.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 382.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 382.3
FF:10181-103D1 60 years, female 476.7
FF:10159-103A6 76 years, female 288.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 89.3
Samples: 4

Max nTPM: 104.2
Min nTPM: 71.1
Sample A Female 104.2
Sample B Female 85.0
Sample C Male 71.1
Sample D Male 97.0
Ventral spinal cord
nTPM: 105.4
Samples: 4

Max nTPM: 110.8
Min nTPM: 99.3
Sample A Female 110.8
Sample B Female 105.7
Sample C Male 99.3
Sample D Male 105.8

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